<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03785

Description Uncharacterized protein
SequenceMATPATAASDAANPEAEVPSAAPAAESGGAFDSGVVAAATPLVVEDGAVEGDAPAAPAPTSGSGHAAPSMPVNPASPATPGPPRPQFAGSPAYASPLAPAFSYNVLPRPPPRPQVGSGAAQQQLASPPAMMVPSVAAAALQPPVPGQYFGNRPSFSYNVVSHANAGLPTGQQFQLDTGTNHALQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSSNTFVASPQQAQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAIGASVPGQPSTILSAPPSLLGRPMTPSASSFPQTSQSPSAFQQPGQQQLYPSYPSAHGTVQPQPLWGYPPQPTGFQQPPFQSYPPGLLGPLGRPMVGSSAVTAYLPSIQPPGVSTTDRDSKELSSANPGSEHPTQQGSQNNDQLEDQKTTAIQDSDAWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEPEKVAAQPVPVSWDKLAGTDWSIVTTSDGKKYYYDNKLKVSSWQLPPEVAELIKNAESGPSKGSSTSLQDAGTIGNKEEISIDIDTPADAGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFKVEMLKERGVLPFSKWEKELPKIVFDPRFKAIPSHSRRRSTFEQYVRTRADEERKEKRAAQRAAVEAYKQLLEEASEDINSNKDYKEFKRKWGTDPRFEALDRKERDALFNEKYAHPYINVFEFQFLNHISSCTILDAFPMFHRVKSIEEKVQSVRNAVIADFKSMLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREDAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKERERETRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEIAARTTGEGKTAINSWTEAKGLVRSDPRYNKLASKDRESIWRRYAEDMARKLRQSDTKEKSDTDGKQRRSSDPPRRR
Length1079
PositionUnknown
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.780
Instability index58.50
Isoelectric point6.77
Molecular weight117068.71
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03785
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     419.79|      49|      51|      99|     147|       1
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   29-   79 (50.68/13.52)	GAF.DSGV.VAAAT..P...LV.V.....EDGAVEG.DA..........P.A..APAP.......TS...GS.GHAA..PSMPvnPA..sPAT
   99-  147 (94.92/31.43)	PAF.SYNV.LPRPP..P...RPQV.....GSGAAQQ.QL..........A.S..PPAM.......MV...PS.VAAA..ALQP..PV...PGQ
  153-  201 (53.87/14.81)	PSF.SYNV.VSHAN..A............GLPTGQQfQL........dtG.T..NHAL.......QV...SRfVPPS..SLQP..PA...PMN
  202-  230 (45.94/11.60)	LA..................RP.........SS................A.F..PGAG.......AM...PP.NPPG..SIRL..PF...PGP
  231-  299 (43.53/10.63)	PRP.SSNT.FVASPqqA...QPQAsqlpsNSGSSDV.STsrsdtrsvpeA.S..PQTM.......QLstgPP.STST..AGSP..SI...TVQ
  301-  323 (37.26/ 8.09)	PT....N...PSLP..T...RPEV......FG...............................................AIGA..SV...PGQ
  324-  386 (42.54/10.23)	PS....TI.LSAPP..SllgRPMT.....PSASSFP.QT..........SqS..PSAFqqpgqqqLY...PS.YPSAhgTVQP.qPLwgyPPQ
  393-  444 (51.04/13.67)	PPFqSYPPgLLGPL..G...RPMV.....GSSAVTA.YL..........P.SiqPPGV.......ST...TD.RDSK..ELSS..AN...PG.
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     208.68|      43|      43|     857|     899|       2
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  694-  732 (35.30/20.55)	..............................RFK.AIpSHSRRRSTFEQYVRTRADEErKEKRAAQRAAVE
  733-  786 (28.40/15.03)	AYKQLLeeasedinsnkdykefkrkwgtdpRFE.AL.DRKERDALFN..............EKYAHPYIN
  789-  843 (39.42/23.83)	EFQFLN.........hissctildafpmfhRVK.SI.E.EKVQSVRNAVIADFKSML.RESKDITST..S
  844-  893 (59.48/39.86)	RWTKVK.................enfrsdaRYK.AM.KHEEREDAFNEYIAELKSAE.KEAEQAAKAKLD
  894-  937 (46.08/29.15)	EQAKLK.......................eREReTR.KRKEREEQEMERV.KLKIRR.KEAVSSYQALLV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.62|      34|      70|     946|     983|       3
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  964- 1030 (43.18/25.64)	NPDLGKGDAEKLFRDHVKDLyercvrdfrallsevitpeiaarttgegktainSWTEAKGLVRSDPR
 1031- 1076 (52.44/29.40)	YNKLASKDRESIWRRYAEDM.....................arklrqsdtkekSDTDGKQRRSSDPP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.61|      27|      49|     473|     499|       4
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  473-  499 (52.01/34.92)	WSAHKTEAGVVYYYNALTGESTYQKPP
  525-  551 (52.60/35.40)	WSIVTTSDGKKYYYDNKLKVSSWQLPP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     112.85|      38|      44|     564|     601|       5
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  564-  587 (31.85/13.88)	......................PS.....KGSSTS......LQDAGTIG....NKEEISID
  588-  632 (50.45/26.84)	IDTPADAGASSVPS....platPSsaselNGSKTT........DAAPMG....HQVSISGE
  635-  685 (30.54/12.96)	KDNSGDGNMSDSSSnsddeehgPS.....EEECTRqfkvemLKERGVLPfskwEKE.....
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03785 with Med35 domain of Kingdom Viridiplantae
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