<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03784

Description Uncharacterized protein
SequenceMATPATAASDAANPEAEVPSAAPAAESGGAFDSGVVAAATPLVVEDGAVEGDAPAAPAPTSGSGHAAPSMPVNPASPATPGPPRPQFAGSPAYASPLAPAFSYNVLPRPPPRPQVGSGAAQQQLASPPAMMVPSVAAAALQPPVPGQYFGNRPSFSYNVVSHANAGLPTGQQFQLDTGTNHALQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSSNTFVASPQQAQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAIGASVPGQPSTILSAPPSLLGRPMTPSASSFPQTSQSPSAFQQPGQQQLYPSYPSAHGTVQPQPLWGYPPQPTGFQQPPFQSYPPGLLGPLGRPMVGSSAVTAYLPSIQPPGVSTTDRDSKELSSANPGSEHPTQQGSQNNDQLEDQKTTAIQDSDAWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEPEKVAAQPVPVSWDKLAGTDWSIVTTSDGKKYYYDNKLKVSSWQLPPEVAELIKNAESGPSKGSSTSLQDAGTIGNKEEISIDIDTPAVQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFKVEMLKERGVLPFSKWEKELPKIVFDPRFKAIPSHSRRRSTFEQYVRTRADEERKEKRAAQRAAVEAYKQLLEEASEDINSNKDYKEFKRKWGTDPRFEALDRKERDALFNEKVKSIEEKVQSVRNAVIADFKSMLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREDAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKERERETRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEIAARTTGEGKTAINSWTEAKGLVRSDPRYNKLASKDRESIWRRYAEDMARKLRQSDTKEKSDTDGKQRRSSDPPRRR
Length1079
PositionUnknown
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.796
Instability index59.00
Isoelectric point8.03
Molecular weight116598.23
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03784
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     407.44|      47|      51|      99|     145|       1
---------------------------------------------------------------------------
   13-   55 (43.27/11.03)	NPEAEV...........PS.AAPAA...............esgGAFD.SGVVAAA.TP...LV..V.EDGAVEG.DA..P.A
   56-   97 (37.55/ 8.64)	APAPTS...........GS.GHAAPSMPvnPAsP.......atPG...........PP...RP.QFaGSPAYAS.PL.....
   99-  126 (42.85/10.86)	...........................................PAFS.YNVLPRP.PP...RP.QV.GSGAAQQ.QL..A.S
  127-  179 (55.12/15.99)	PPAMMV...........PS.VAAAALQP..PV.P..gqyfgnrPSFS.YNVVSHA.NA.........GLPTGQQfQLdtG.T
  180-  209 (32.47/ 6.52)	NHALQV...........SRfVPPSSLQP..PA.P.......mnLA................RP.SS.............A.F
  210-  246 (56.57/16.59)	P....................GAGAMPP..NP.P.........G..S.IR.LPFPgPP...RP.SS.NTFVASP.QQ..A.Q
  247-  292 (45.97/12.16)	PQASQL...........PS.NSGSS.....DV.S.........TSRSdTRSVPEA.SP...QTmQL.STGPPST.ST..A.G
  293-  352 (38.43/ 9.01)	SPSITVqmptnpslptrPE.V.FGAIGA..SV.P.......gqPS....TILSAP.PSllgRP.MT.PSASSFP.QT..SqS
  353-  397 (55.21/16.02)	PSAFQQ...........P...GQQQLYP..SY.PsahgtvqpqPLWG.Y.......PP...QP.....TGFQQP.PF..Q.S
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     257.25|      45|      45|     864|     908|       2
---------------------------------------------------------------------------
  691-  741 (48.69/26.54)	EECTRQFKvE...............MLKErgvLPFSKWEKE.LPKIVFDPRFK.......AipsHSRRR........STF....EQ
  742-  800 (44.69/23.77)	YVRTRA.D.E...............ERKE...KRAAQRAAVEAYKQLLEEASEdinsnkdY...KEFKRkwgtdprfEAL....DR
  801-  863 (39.22/19.98)	KERDALFN.EkvksieekvqsvrnaVIAD...FKSMLRESKDITST..SRWTK.......V...KENFR.......sDARykamKH
  864-  908 (68.88/40.53)	EEREDAFN.E...............YIAE...LKSAEKEAEQAAKAKLDEQAK.......L...KERER........ETR....KR
  909-  953 (55.77/31.45)	KEREEQEM.E...............RV.K...LKIRRKEAVSSYQALLVEIIK......dP...KASWT........ESK....PR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     236.46|      49|      49|     559|     607|       3
---------------------------------------------------------------------------
  423-  459 (44.85/19.26)	...IQPP..GVSTTDR....DS....KE...L..............sSANPG....S..EHPTQQ.GS.QNNDQL
  460-  508 (53.72/24.62)	E.DQKTT..AIQDS......DAWSAHKTeagV...........vyyyNALT....GE..STYQKPPGYKGEPEKV
  526-  584 (46.67/20.36)	SI.VTT......SDGKkyyyDN.KLK......vsswqlppevaelikNAESGPSKGS..STSLQDAGTIGNKEEI
  585-  630 (58.29/27.37)	SIDIDTP..AVQTGGR....DSLPLRQT...V..............aPA..SPSALDliKKKLQDAGA....SSV
  631-  683 (32.93/12.07)	PSPLATPssASELNGS.kttDAAPMGHQ...V......sisgekskdNSGDGNMSDS..SSNSDD..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.37|      25|      45|    1005|    1029|       4
---------------------------------------------------------------------------
 1005- 1029 (43.62/28.90)	ARTTGEGKTAINSWTEAKGLVRSDP
 1051- 1075 (42.75/28.16)	ARKLRQSDTKEKSDTDGKQRRSSDP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03784 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEQAAKAKLDEQAKLKERERETRKRKEREEQEMERVK
2) AFSYNVLPRPPPRPQVGSGAAQQQLASPPAMMVPSVAA
3) AGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFK
4) AGLPTGQQFQLDTGTNHALQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSSNTFVASPQQAQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAIGASVPGQPSTILSAPPSLLGRPMTPSASSFPQTSQSPSAFQQPGQQQLYPSYPSAHGTVQPQPLWGYPPQPTGFQQPPFQSYPPGLLGPLGRPMV
5) EDMARKLRQSDTKEKSDTDGKQRRSSDPPRRR
6) MATPATAASDAANPEAEVPSAAPAAESGGAFDSGVVAAATPLVVEDGAVEGDAPAAPAPTSGSGHAAPSMPVNPASPATPGPPRPQFAGSP
7) SSAVTAYLPSIQPPGVSTTDRDSKELSSANPGSEHPTQQGSQNNDQLEDQKTTAIQDSDAW
8) VAELIKNAESGPSKGSSTSLQDAGTIGNKEEISIDIDTPAVQTGGRDSLPLRQTVAPA
884
100
625
165
1048
1
413
553
920
137
698
411
1079
91
473
610










Molecular Recognition Features






MoRF SequenceStartStop




1) ATPLV
2) GKKYYYD
3) KIVFDPRFKAI
4) LDLIKKKLQ
5) SIWRRYA
39
533
719
615
1041
43
539
729
623
1047