<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03784

Description Uncharacterized protein
SequenceMATPATAASDAANPEAEVPSAAPAAESGGAFDSGVVAAATPLVVEDGAVEGDAPAAPAPTSGSGHAAPSMPVNPASPATPGPPRPQFAGSPAYASPLAPAFSYNVLPRPPPRPQVGSGAAQQQLASPPAMMVPSVAAAALQPPVPGQYFGNRPSFSYNVVSHANAGLPTGQQFQLDTGTNHALQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSSNTFVASPQQAQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAIGASVPGQPSTILSAPPSLLGRPMTPSASSFPQTSQSPSAFQQPGQQQLYPSYPSAHGTVQPQPLWGYPPQPTGFQQPPFQSYPPGLLGPLGRPMVGSSAVTAYLPSIQPPGVSTTDRDSKELSSANPGSEHPTQQGSQNNDQLEDQKTTAIQDSDAWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEPEKVAAQPVPVSWDKLAGTDWSIVTTSDGKKYYYDNKLKVSSWQLPPEVAELIKNAESGPSKGSSTSLQDAGTIGNKEEISIDIDTPAVQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFKVEMLKERGVLPFSKWEKELPKIVFDPRFKAIPSHSRRRSTFEQYVRTRADEERKEKRAAQRAAVEAYKQLLEEASEDINSNKDYKEFKRKWGTDPRFEALDRKERDALFNEKVKSIEEKVQSVRNAVIADFKSMLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREDAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKERERETRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEIAARTTGEGKTAINSWTEAKGLVRSDPRYNKLASKDRESIWRRYAEDMARKLRQSDTKEKSDTDGKQRRSSDPPRRR
Length1079
PositionUnknown
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.796
Instability index59.00
Isoelectric point8.03
Molecular weight116598.23
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03784
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     407.44|      47|      51|      99|     145|       1
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   13-   55 (43.27/11.03)	NPEAEV...........PS.AAPAA...............esgGAFD.SGVVAAA.TP...LV..V.EDGAVEG.DA..P.A
   56-   97 (37.55/ 8.64)	APAPTS...........GS.GHAAPSMPvnPAsP.......atPG...........PP...RP.QFaGSPAYAS.PL.....
   99-  126 (42.85/10.86)	...........................................PAFS.YNVLPRP.PP...RP.QV.GSGAAQQ.QL..A.S
  127-  179 (55.12/15.99)	PPAMMV...........PS.VAAAALQP..PV.P..gqyfgnrPSFS.YNVVSHA.NA.........GLPTGQQfQLdtG.T
  180-  209 (32.47/ 6.52)	NHALQV...........SRfVPPSSLQP..PA.P.......mnLA................RP.SS.............A.F
  210-  246 (56.57/16.59)	P....................GAGAMPP..NP.P.........G..S.IR.LPFPgPP...RP.SS.NTFVASP.QQ..A.Q
  247-  292 (45.97/12.16)	PQASQL...........PS.NSGSS.....DV.S.........TSRSdTRSVPEA.SP...QTmQL.STGPPST.ST..A.G
  293-  352 (38.43/ 9.01)	SPSITVqmptnpslptrPE.V.FGAIGA..SV.P.......gqPS....TILSAP.PSllgRP.MT.PSASSFP.QT..SqS
  353-  397 (55.21/16.02)	PSAFQQ...........P...GQQQLYP..SY.PsahgtvqpqPLWG.Y.......PP...QP.....TGFQQP.PF..Q.S
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     257.25|      45|      45|     864|     908|       2
---------------------------------------------------------------------------
  691-  741 (48.69/26.54)	EECTRQFKvE...............MLKErgvLPFSKWEKE.LPKIVFDPRFK.......AipsHSRRR........STF....EQ
  742-  800 (44.69/23.77)	YVRTRA.D.E...............ERKE...KRAAQRAAVEAYKQLLEEASEdinsnkdY...KEFKRkwgtdprfEAL....DR
  801-  863 (39.22/19.98)	KERDALFN.EkvksieekvqsvrnaVIAD...FKSMLRESKDITST..SRWTK.......V...KENFR.......sDARykamKH
  864-  908 (68.88/40.53)	EEREDAFN.E...............YIAE...LKSAEKEAEQAAKAKLDEQAK.......L...KERER........ETR....KR
  909-  953 (55.77/31.45)	KEREEQEM.E...............RV.K...LKIRRKEAVSSYQALLVEIIK......dP...KASWT........ESK....PR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     236.46|      49|      49|     559|     607|       3
---------------------------------------------------------------------------
  423-  459 (44.85/19.26)	...IQPP..GVSTTDR....DS....KE...L..............sSANPG....S..EHPTQQ.GS.QNNDQL
  460-  508 (53.72/24.62)	E.DQKTT..AIQDS......DAWSAHKTeagV...........vyyyNALT....GE..STYQKPPGYKGEPEKV
  526-  584 (46.67/20.36)	SI.VTT......SDGKkyyyDN.KLK......vsswqlppevaelikNAESGPSKGS..STSLQDAGTIGNKEEI
  585-  630 (58.29/27.37)	SIDIDTP..AVQTGGR....DSLPLRQT...V..............aPA..SPSALDliKKKLQDAGA....SSV
  631-  683 (32.93/12.07)	PSPLATPssASELNGS.kttDAAPMGHQ...V......sisgekskdNSGDGNMSDS..SSNSDD..........
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.37|      25|      45|    1005|    1029|       4
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 1005- 1029 (43.62/28.90)	ARTTGEGKTAINSWTEAKGLVRSDP
 1051- 1075 (42.75/28.16)	ARKLRQSDTKEKSDTDGKQRRSSDP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03784 with Med35 domain of Kingdom Viridiplantae
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