<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03781

Description Uncharacterized protein
SequenceMPSSSSPLSPQSVVVPGVERMLVRGGSRSTGTRSLREIDEEEEEDDDDGGGKTYVAVGKDLKDSKANIRWAAAARKLHANKLLVLLHVHQPADRIMSGLCKVPAKQLEEKELRAYRKIEKDDMNKLLEQYLCYCRAFPKVQAEILVIEKNNVANGIVELIDQHHITKLVMGTSSFSVKRQVPKSKVAAIVHQQAKPYCQILYICKEGLACTRDASQLADKGDSPRSSSGSSLSDQSEFPPRSVSMPSWYPGFLGSPDQQSLRQRSNSVSYPFSRHLENGVENISPIRRHSVDVAPKGCSPNSSHQSNGVSSPTLTDLDTVDGSSVPVSSSSSEEHQHSMVEANIQNEMFEQWQQVRDELERSRKEASEGRQKAERELFEASKMFRARENSLCKEKIAIEERLTREKASLEKEHLQIYNELQKANEQIMELERRLMDANSLMQELHTVQGELQREKDNAVKEAEKMSQINCNNVSCSTGAVALTEFTYTEIKEATNDFNESKMIGHGGCGSVYKGFLRHTTVAIKKFNREGTTGEKEFDDEVEILGRMGHPNLVTLIGVCREAKALVYEFLPNGSLEDRLQCKHQTDPLPWRMRIKIAADICTALIFLHSNKPKGIVHGDLKPDNVLLGDNFVGKLGDFGISRPLNLTNTTITPYHRTNQIKGTLGYMDPGYIASGEITAQYDVYSFGVVLLRLLTGKSPLGLPSEVEAALNNEMLQQVVDASAGEWPPEYSKKLAILALRCCRYDRKERPDLAKEAWGVLQAMVNCPDNKCETPSFFICPMTQEIMKDPHIAADGFTYEEERLTRGKGSLEKEHLQIYNELQKANEQIMELERRLMDANSLMQELQTVQGELQREKDNAVKEAGKMSQINCNNVSCSTGAVALTEFTYTEIKEATNDFNKSKMIGHGGCGKCARLLVKLNLELKDIRINQSNQILMEMGDDPLGLFLLPKAVKDSSLRPPAHGRDVGKESPRWALLDKTAYFAGADVRNATTAFGKTRDGHEIQVTLCTAAQPPLVSYMCVHTPTLKPSDDFANEPEIIAAHDDLLLIRLTLGHVDNHQNKLLSDYFVYQAQASASDGPSLARVTNPGRDHIFPDTHVGILKQQHYIIAALTPTSKPGGEFHLHLYHSNTKQWTTKVLQLGGLPPAPPLNFFHHYTNKVISLSHQAPGLMGFADLWRGVVLVNVLQEEPAPSYILLPPPLRKRNKLDGGNPLDVRDIAIDLQGCINYVEFELGILPHPQRHSGSYIADGWTAAKWSWIAESGCWRMDCHLHSSDISDTMMPRLPNYSEPIPQPNLEKLHVGHPVLSLHDTHLVYLMAKIDHLAHKAWILLIDLRNGVIQQPIDFMGADRTVGICETYVQTTISRYPCRKWRHRRRTGNNNNAIVHAVLDS
Length1390
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.461
Instability index45.88
Isoelectric point6.40
Molecular weight155434.04
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



ECO:0000256	ARBA:ARBA00003861

GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03781
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     207.68|      30|      30|     400|     429|       1
---------------------------------------------------------------------------
  350-  376 (28.47/12.97)	.......................EQWQQVRDELERSRKEASEGRQKAERE
  377-  426 (39.02/20.28)	LFEaskmfrarenslckekiaieERLTREKASLEKEHLQIYNELQKANEQ
  427-  457 (49.40/27.48)	IME...................lERRLMDANSLMQELHTVQGELQREKDN
  801-  827 (42.00/22.35)	.......................ERLTRGKGSLEKEHLQIYNELQKANEQ
  828-  858 (48.79/27.05)	IME...................lERRLMDANSLMQELQTVQGELQREKDN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     264.64|      52|     398|     458|     509|       2
---------------------------------------------------------------------------
  458-  509 (108.05/81.97)	AVKEAEKMSQ..INCNNVSCSTGA...............VALTEFTYTEIKEATNDF.NESKMIGHGGCG
  518-  548 (24.99/12.44)	.....................HTT...............VAIKKFN.REGTTGEKEFdDEVEILGRMG..
  754-  800 (23.81/11.45)	..KEAWGVLQamVNCPDNKCETPSfficpmtqeimkdphIAADGFTYEE.....................
  859-  910 (107.79/81.75)	AVKEAGKMSQ..INCNNVSCSTGA...............VALTEFTYTEIKEATNDF.NKSKMIGHGGCG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     277.39|      67|     504|     600|     668|       3
---------------------------------------------------------------------------
  600-  668 (113.89/73.60)	ICTALifLHSNKPKGIVHGDLKPDNVLLGDNF..VGKLGDFGISRPLNL....TNTTITPYHRTNQIKGTLGYMD
 1107- 1174 (105.46/62.20)	IIAAL..TPTSKPGGEFHLHLYHSNTKQWTTK..VLQLGGLPPAPPLNFfhhyTNKVISLSH...QAPGLMGFAD
 1184- 1233 (58.04/30.27)	...............VLQEEPAPSYILLPPPLrkRNKL.DGG..NPLDV....RDIAIDLQGCINYVEFELG...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     158.25|      39|     979|     289|     327|       4
---------------------------------------------------------------------------
  216-  245 (47.02/24.29)	...QLADKGDSPRSS......SGSSLSDQSEFPPRSVSM
  264-  286 (40.20/19.75)	RSNSVS....YPFSRHLENGVENIS............PI
  289-  327 (71.03/40.25)	HSVDVAPKGCSPNSSHQSNGVSSPTLTDLDTVDGSSVPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     154.84|      51|      71|      79|     132|       7
---------------------------------------------------------------------------
   79-  132 (76.32/61.60)	ANKLLVLLHVHQPADRIMsGLCKVPAK.QLEEKELRAYRKIEKDDMNKLLeqYLC
  153-  204 (78.52/52.66)	ANGIVELIDQHHITKLVM.GTSSFSVKrQVPKSKVAAIVHQQAKPYCQIL..YIC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.02|      36|     244|     689|     726|      11
---------------------------------------------------------------------------
  689-  726 (56.06/41.83)	VLLRLltGKSPLG...LPSEV.EAALNNEMLQQVVDASAGEW
  934-  973 (56.97/36.30)	ILMEM..GDDPLGlflLPKAVkDSSLRPPAHGRDVGKESPRW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03781 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ERMLVRGGSRSTGTRSLREIDEEEEEDDDDGGGKTYVA
2) GVENISPIRRHSVDVAPKGCSPNSSHQSNGVSSPTLTDLDTVDGSSVPVSSSSSEEHQHSMVEANIQNE
3) QWQQVRDELERSRKEASEGRQKAERELFEA
19
279
351
56
347
380










Molecular Recognition Features






MoRF SequenceStartStop




NANANA