<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03775

Description Uncharacterized protein
SequenceMAAGAAERQLVVAVEGTAALGPYWAVTVADYVEKIVRSFCAHEMAGQKLAGAPPELALVVFHTHGPYSAFCVQRSGWTKDMNVFLSWLSGISFSGGGFSEAAISEGLAEALMILQGSPSNSQNHQSHEVQKHCILVAASNPYPLPTPVYRPLVQSSDHKENNDGAKESCLADAETVAKSFAQCSVSLSVVSPKQLPTLKAIYNAGKRNPRAADPSVDHTKNQHFLVLLSDNFLEARTALSRPLPGNLVSNHPITKMDTAATSVPVPTSNGNPSVNGPMLTRQPNGVVGIPTANIKTEPTTLPPMVSAPAFSHVTPVANGVSQGLSTVQSPSPSLISQETNLANDSVQEHKPLINTIQQSIRPGGPANVSILNNISQHRSVATIMSGGMPGIPSMSGTGQPIGSQQIVQNTFGSNTAITGNSNIAVSSSLGSIQSNIGISGPPVTQGGSMGSTQLGQGGINTNQNMISSLGTTTVSSAPAMMPTPGMAQQAGVNSLGVTNSSAMNMPIVQHPNAQQQQQQPPPKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGMVGAGMGQQYMQGHGRTVQQMMQGKMAPQGPGSMPGAGSMPGGGYLS
Length684
PositionUnknown
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.166
Instability index43.58
Isoelectric point8.71
Molecular weight71713.68
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
DNA binding	GO:0003677	IEA:EnsemblPlants

GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
jasmonic acid mediated signaling pathway	GO:0009867	IEA:EnsemblPlants
positive regulation of defense response	GO:0031349	IEA:EnsemblPlants
positive regulation of flower development	GO:0009911	IEA:EnsemblPlants
positive regulation of transcription, DNA-templated	GO:0045893	IEA:EnsemblPlants
red, far-red light phototransduction	GO:0009585	IEA:EnsemblPlants
response to far red light	GO:0010218	IEA:EnsemblPlants
response to red light	GO:0010114	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03775
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     305.67|      94|     168|     249|     351|       1
---------------------------------------------------------------------------
  249-  337 (123.00/62.56)	................................SNHPITKMDTAA..T..SVPVPTSNGNPS.VNGPMLTRQPNGV..VGIPTANIKTEPTTLPPmvsapafshVTPVAN.GVSQGLSTVQSP...SPSLISQ
  338-  445 (118.91/48.81)	ETNLANDSVQEHKPlintiqqsirpggpanvsILNNISQHRSVA..TimSGGMP...GIPS.MSG...TGQPIGS..QQI.VQNTFGSNTA............ITGNSNiAVSSSLGSIQSNigiSGPPVTQ
  451-  511 (63.76/21.16)	STQLGQGGINTNQN..............................miS..SLGTTTVSSAPAmMPTPGMAQQ.AGVnsLGVTNSSAMNMPIVQHP......................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     187.44|      58|     530|       7|      65|       2
---------------------------------------------------------------------------
    7-   65 (95.92/76.84)	ERQ....LVVAVEGTAAlGPYWAVTVADYVE..KIVRSFCAHEMAGQKLAGAPPELALVVFHTHG
  535-  598 (91.52/68.24)	QRQgqpvFICKLEGYRS.GTASETLAADWPEtmQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03775 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ATIMSGGMPGIPSMSGTGQPIGSQQIVQNTFGS
2) LPGNLVSNHPITKMDTAATSVPVPTSNGNPSVNGPMLTRQPNGVVGIPTANIKTEPTTLPPMVSAPAFSHV
3) PVANGVSQGLSTVQSPSPSLISQETNLANDSVQEHKPLINTIQQSIR
4) SNIGISGPPVTQGGSMGSTQLGQGGINTNQNMISSLGTTTVSSAPAMMPTPGMAQQAGVNSL
5) SSAMNMPIVQHPNAQQQQQQPPPKYVKIWEG
381
243
315
434
500
413
313
361
495
530










Molecular Recognition Features






MoRF SequenceStartStop




NANANA