<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03773

Description Uncharacterized protein
SequenceMETLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATSQSDYLRKISLKMLSMETKTQQNPGNAQVIQNQNPPGPVPGLPPQGSNPAQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNLPGVNQTATLQNMSGMPQNTMNNSLAQGASQDIYATQRQMAGRQQQQQQSQNQLIYQQQQIMMKQKLQQNSLMQQQSLLQPTQMQSSQQSMMQIPSGLQPGQSIPQTQPMVQSSSQGGIQQNALNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQPTQQPNIPLQHQLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPVQSNNLLNMQQTQQMLNQQSMPSHQQQQLGSQANISTLQQQQQQNQQQQQLLGTVPNVPNIQRMHMLQTKAVQQPQQQQHAQQSSLGLMQPQSQHNQLQQSQQHLMSQFQAQPNQLQQQLGMPQQPPMQQRLQTSAGMLLQQNNIDQQKQFMQAQRGLQEVSSSTSVDSTAQTGHTGTGTGDWQEEAYQMVKNLKDQYFAELNDLYNKISLKLQHVDNMVPPQKPTEQYEKMKSFKMMLERTMHVLQLNKGNIQPALRDKIPAYERQIISILNSQKRPRAQGQQTQFQQSAGQGPNIPQQQPSQGLQQHDNHTNQMPQASMPSMSTGLQSSGAAGIQHLPASPATNFGVPTTQQNVTNAPQAASNLEVTQGSNFNSLQHGSMSGALQQGSTGPMQGTLNAQQQASSSILSHNSVGTMQANANSMQANANSLQQLKQQQQEHHMMQSQQMKRQMFQQFQQKQMLQQQLPAQQQLQKQQQSQMQVPQHHSGNDANDLKVRQGAAMKPGIYQQHLAQRNNFYNQQIKQGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSITNTGQATHQQTNMAPQTQSIAVNTPGISASPLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRTTQRQSLSAAVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITHDGTGTSKKMKRDTSAMPLNVSSAGSVNDSLKQTFSISTPELQSTATSRVKWQKTEINHALMEEIHEINQQLIDTELHVCEDDADSFGATSEGAEGTVIKCTFTAVAVSPSLKSMFASAQMSPILPLRVLVPASYPKCSPVLLDKFPDEQRNSDDLSTKARSKFSILLRGLAEPMSLREIARTWDACARKVIAEYAQQTGGGSFSSSYGCWENCVGA
Length1265
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.03
Grand average of hydropathy-0.765
Instability index73.38
Isoelectric point9.30
Molecular weight139070.26
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03773
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.16|      23|      26|     232|     256|       1
---------------------------------------------------------------------------
  233-  261 (29.20/ 8.38)	GGIQQNALNSvpQSVQSLLQQPTQsamrQ
  343-  365 (35.96/ 7.52)	PSHQQQQLGS..QANISTLQQQQQ....Q
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.59|      24|      28|     843|     870|       2
---------------------------------------------------------------------------
   56-   84 (17.75/ 6.69)	QQNPGnAQViqNQNPPGPVpGLpPQGSNP
  164-  188 (30.84/ 6.91)	QQSQN.QLI..YQQQQIMMkQK.LQQNSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      91.03|      25|      27|     863|     888|       4
---------------------------------------------------------------------------
  313-  335 (31.53/ 7.14)	DM..........PQ.QQRLP.VQSNNLLNMQQTQQ.
  619-  640 (29.66/ 6.12)	............PQ.QQPSQGLQQHDNHTNQM.PQA
  851-  886 (29.83/ 9.16)	PIsspqnlqassPQiSHHSPQVDQHNLLPSQVKTGT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     180.97|      38|      66|     366|     403|       6
---------------------------------------------------------------------------
  278-  311 (37.61/ 7.68)	AQPTQQ.....PNIP.LQ.HQLMGQQQN...LQQNQligQQNGA.
  366-  403 (68.31/21.67)	NQQQQQLLGTVPNVPNIQ.RMHMLQTKA...VQQPQ...QQQHAQ
  435-  471 (40.78/ 9.13)	NQLQQQ.LG.MPQQPPMQqR...LQTSAgmlLQQNN...IDQQKQ
  728-  762 (34.27/ 6.16)	SILSHNSVGTMQ..ANAN.SMQA.NANS...LQQLK...QQQQEH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     135.84|      39|      66|     989|    1027|       7
---------------------------------------------------------------------------
  989- 1010 (21.73/ 8.48)	.......................KALRTTQRQSLSAAVSDIGSVV
 1011- 1050 (41.04/23.24)	SMIDRIAGSAPGNGSRAavgedlVAMTKCRLQARNFITHD.....
 1051- 1076 (31.05/15.60)	...........GTGTSK......KMKRDTSAMPLN..VSSAGSVN
 1078- 1116 (42.01/23.97)	SLKQTFSISTPELQSTA..tsrvKWQKTEINHALMEEIHEI....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.35|      15|      16|     195|     209|       9
---------------------------------------------------------------------------
  195-  209 (28.30/11.12)	LQPTQMQSSQQSMMQ
  214-  228 (23.06/ 7.11)	LQPGQSIPQTQPMVQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.72|      21|      38|     643|     663|      11
---------------------------------------------------------------------------
  107-  126 (33.62/13.98)	QSSLTNLGQNLPGV.................N.QTAT.L
  650-  687 (24.66/ 8.29)	QSSGAAGIQHLPASpatnfgvpttqqnvtnaP.QAASNL
  691-  707 (23.43/ 7.51)	QGSNFNSLQH......................gSMSGAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.09|       9|     331|      92|     101|      12
---------------------------------------------------------------------------
   92-  101 (14.72/ 8.75)	LMSQQQArQP
  426-  434 (19.36/ 7.59)	LMSQFQA.QP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     236.30|      55|     325|     473|     529|      13
---------------------------------------------------------------------------
  473-  529 (88.85/42.36)	MQA.QRGLQEVSSStsVDSTAQTGHTGTGTGDW...QEEA.....YQMVKNLK.....DQYFAELND......LYNK
  534-  581 (42.78/13.92)	.......LQHVD.....NMVPPQKPT............EQ.....YEKMKSFKmmlerTMHVLQLNKgniqpaLRDK
  582-  614 (32.99/ 8.77)	IPAyERQIISI.....LNSQKRPRAQGQQT.QF...QQSA.....GQ..............................
  788-  842 (71.68/29.09)	LPA.QQQLQKQQQS...QMQVPQHHSGNDANDLkvrQGAAmkpgiYQ............QHLAQRNN......FYNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     104.98|      29|     203|     943|     978|      15
---------------------------------------------------------------------------
  955-  978 (33.83/14.95)	LLAE.FTSVDGNQANMPTQVLTKSS.........
 1159- 1188 (37.02/23.53)	SLKSmFASAQMSPI.LPLRVLVPAS..YP.kCSP
 1190- 1222 (34.12/28.36)	LLDK.FPDEQRNSDDLSTKARSKFSilLRglAEP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03773 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRT
2) QIISILNSQKRPRAQGQQTQFQQSAGQGPNIPQQQPSQGLQQHDNHTNQMPQASMPSMSTGLQSSGAAGIQHLPASPATNFGVPTTQQNVTNAPQAASNLEVTQGSNFNSLQHGSMSGALQQGSTGPMQGTLNAQQQASSSILSHNSVGTMQANANSMQANANSLQQLKQQQQEHHMMQSQQMKRQMFQQFQQKQMLQQQLPAQQQLQKQQQSQMQVPQHHSGNDANDLKVRQGAAMKPGIYQQHLAQRNNFYNQQIKQGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSITNTGQATHQQTNMAPQTQSIAVNTP
3) QKLQQNSLMQQQSLLQPTQMQSSQQSMMQIPSGLQPGQSIPQTQPMVQSSSQGGIQQNALNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQPTQQPNIPLQHQLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPVQSNNLLNMQQTQQMLNQQSMPSHQQQQLGSQANISTLQQQQQQNQQQQQLLGTVPNVPNIQRMHMLQTKAVQQPQQQQHAQQSSLGLMQPQSQHNQLQQSQQHLMSQFQAQPNQLQQQLGMPQQPPMQQRLQTSAGMLLQQNNIDQQKQFMQAQRGLQEVSSSTSVDSTAQTGHTGTGTGDWQEEA
4) RKISLKMLSMETKTQQNPGNAQVIQNQNPPGPVPGLPPQGSNPAQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNLPGVNQTATLQNMSGMPQNTMNNSLAQGASQDIYATQRQMAGRQQQQQQSQNQLIYQQQQ
954
588
181
42
993
948
508
176










Molecular Recognition Features






MoRF SequenceStartStop




NANANA