<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03769

Description Uncharacterized protein
SequenceMEGGGIGDWRSQLQPEARRRITAKILESLNKKLGADFAKGLVDLQRVSTRIEGRIFSISCTQSDYLRRVSLTMLNLESRLGHQPPQLLAQEPSHTFPVHCHGPIGAHQSSKPKVDLLQQQTSCDQQSPCIQVDSKHQEMPPDDKHIDLLEGNSPDMNSTRGNMLRAHNTRTLTDVLTADHLLDQVPPRSQKKLCMDDRLSDLPDTVLHHIMSLLSAQDVARTCILSKRWKELSASAPCLDICIDKFGMDRVRFSEFVAHLLLLRAPNSLHTFRLHSFAIDQASSWINRAIELKAQVLEFTECIRWEPFYLDPQLMAFASQYLKCLKLTNVTLDSNAFEPLNRACPALENLQLSQSFLEVPEICSASLKNLDIMQCSLLTNLVIQTPRLVSLRFRCLQYKCSSCSRYPVITEAVTLCDLPNAKNIDLSCSGRQVTFDREIQKFPMYGKLTSISLGEWCLSDKFSRLFCLLRHSPELEELTLKLEVERQDHNGEDEIQLMAGGSFSAENLKRVTICCAEGDARAAMLENMFRANATSLEEMHIKHY
Length544
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.271
Instability index60.28
Isoelectric point6.42
Molecular weight61581.16
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03769
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.42|      23|      28|     322|     349|       1
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  322-  344 (39.29/38.98)	LKCLKLTNVTLDSNAFEPLNRAC
  373-  395 (40.13/24.87)	MQCSLLTNLVIQTPRLVSLRFRC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.64|      30|      51|     193|     225|       2
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  193-  225 (44.13/36.09)	LCMD....DRLSdLPDTVLHhiMSLLSAQDVARTCIL
  241-  274 (47.51/27.49)	ICIDkfgmDRVR.FSEFVAH..LLLLRAPNSLHTFRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.85|      12|     124|     345|     359|       3
---------------------------------------------------------------------------
  345-  359 (15.95/18.35)	PALENLQLSqsfLEV
  473-  484 (20.90/12.62)	PELEELTLK...LEV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.71|      29|      29|      90|     118|       5
---------------------------------------------------------------------------
   90-  118 (54.55/33.60)	QEPSHTFPVHCHGPIGAHQSSKP...KVDLLQ
  119-  150 (49.16/29.60)	QQTSCDQQSPCIQVDSKHQEMPPddkHIDLLE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03769 with Med15 domain of Kingdom Viridiplantae
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