<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03768

Description Uncharacterized protein
SequenceMDELGIIEQGVDWRTRLGQDIRDSMKNDILFSLQTKLQITSTTLIDLQKVAARIEERIHTIASDYGDYLRRICLTRGDLDSYDALLNNCQRRQASIRSSVLLHQENKQGDQIIQAERNIKAKVCYGVLSSQVTLNDHKEHSHPYGKDMISKLPNDLFQHIMSFLSMREAVRTSVLSHWWVNRWTLLQSIHLDIYWFHMDREKFSSFLDKLLLSRVHADAPMDTFELKSFAIDRASCWINHAIKHNAKVLKFAEYERWEPFYLDPNLVELSSRYLETLELTNVALDATIFNPLNNACPALQNMLLTDCLLEVEEISSSSLKNLDIIDCSLLKDLSICTPSLLSLCIKDERTDNSSFRNSYLIFATVTIVDASSVSSMELSAMDRQFTFVERDVGEPMFRNLRILHLGLWCIDNMFSPLRRFVLHSPMLRMVTLRLSLLDWKFHITKEHEQMLVGIRDRRGLILYFDWQPGPRRDGQAGPSGGSGGGGDRLSALPDALLFRIVSHLKAREAVRTSGLSKRWRHVWASAPRVDVRYPCACDGRAVDQKRFHDFVTILLLRRRPLVPFKALRLSWSHDEDDMSAWIVHAVRRGAEEIDLSARRHQGYPVPDYTNFISPKIKILKLTHLGTTTRFTAVNTLDQLCSGCTSLEELELKDTIRLSEALVYHQLPCDLRWLHG
Length675
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy-0.225
Instability index48.49
Isoelectric point7.34
Molecular weight77748.48
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03768
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     643.57|     164|     337|     145|     308|       1
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  145-  308 (282.22/175.21)	GKDMISKLPNDLFQHIMSFLSMREAVRTSVLSHWWVNR..WTLLQSIHLDIYW......FHMDREKFSSF....LDKLLLSRVHADAPMDTFELK.SFAIDRASCWINHAIKHNAKVLKFAEYE...RWE....PFYLDPNLVELSSRYLETLELTNVALDA..TIFNPLNN...ACPALQNMLLTDCL
  357-  479 (127.17/74.74)	NSYLIFATVTIVDASSVSSMELSAMDRQFTFVERDVGEpmFRNLRILHLGL.W......C.ID.NMFSPLrrfvLHSPMLRMV..TLRLSLLDWK..FHITKEHEQMLVGIRDRRGLILYFDWQpgpRRDgqagPS.....................................................
  485-  655 (234.19/144.08)	GGDRLSALPDALLFRIVSHLKAREAVRTSGLSKRWRHV..WA..SAPRVDVRYpcacdgRAVDQKRFHDF....VTILLLRR.RPLVPFKALRLSwSHDEDDMSAWIVHAVRRGAEEIDLS..A...RRH....QGYPVPDYTNFISPKIKILKLTHLGTTTrfTAVNTLDQlcsGCTSLEELELKDTI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.08|      13|      19|     314|     326|       3
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  314-  326 (20.85/11.63)	ISSSSLKNLDIID
  335-  347 (23.23/13.76)	ICTPSLLSLCIKD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03768 with Med15 domain of Kingdom Viridiplantae
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