<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03766

Description Uncharacterized protein
SequenceMVPAAGGGGEGGELERRVMAALKASEARGDQPLVWAVEVARVVAGEGTGLPSADLAGILVSNLCFAHNSPSLWKLVGHAVASRLLCPLHVLALLTPRVLPQRRAQPEAYRLYLELLRSNVTSSFLSMEPGPNRDKITKSIDDALQLSKIYGFSGIDAGHVIIFFMMFVITKLIDCTLEDCGFPSGLTEEQESIYAIEGPQDMDLDVKGVSTEKQSEHRAQLRRKSTVMALDVLIMMVADRKIQSFLRLIFLNMPEKFSALSQRLSLVEAHKVELETLLTANHKIDDLLMNIRRVSNTAYQPNNKRLLGVLGNMKYGGSMLGQFTGAGRAACWVIFDIYVENAIDGKHLSAISAIEVLKEMTKTLQAINEASWQETFKALWISALRLVQRAREPLEGPIPHLDSRLCMLLALIPLSIGAILKEEADVHGAQGSKSLPKKSGLVSSLQDLIQYSGLLVPPSSVVNAANAAASKAAAFKANYKSGGGNPAMMGQNDSSTKTVGNMLHLIVEACISRNLIDTSAYLWPGYVVSSGHLKDATLPQESPWLNFMQGAPLSGPLIDALIATPASSTTELDRLYHIALNGSEEEKSAAAKILCGASFVCGWNIQEYVVRMVVKLLSPPLPSNSSTQGSTSHYLAQMSTLNALLLGISYGDAIHIISLYGMVPDVAAALMPICEVFGSIPPPSNHKPAIVGEISVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLLLMRNNHIDFANSSANSRNSSNNIVPLNEVPAQPLYIDSFPKLRAWYFQNQACIASTLSGLCNKNPVHQVANKILSMICRKMNKPGVSSGNLSSTSSSSVSGSSVSTSDDYQRPTVPAWEFLEAVPFVLEAVLTACAHGRFSSRDLTTSLRDLVDFLPASIAAIVSYFLAEITRGIWKMVPMNGTEWPSPGASLHSIEAEIKEILASAGIQIPSCYPRGVPPMLPLPMAALVSLTITFKLDKSSEYIHAISGQALENCAGGSSWPSMPIIAALWTQKVRRWHDFIILSCLRSPFGRDKDAVAQLIQSCFSSFLRSSCSGSDFTANRGVGALMGEAITGHGLQLPMAPGFIYLRTCRTFHDTYFVSEVILKQVIEWADKLANGFSSSGPPQLKSGRTPLSSAACMAHQVAMLGGGLLCVAGGPLLVQVLYEETLPTLLLSAREESMKDPGPVSSTLQGYAMANMLFFCGSLLWGAERTSPVMKLSFLSRRPRVVGNHMDFMAGVLDGHILLGCDHGTWKAYVSRFVFLVVKFVPSWLQDIKLDTLKKIASGLRSWNEHDLALALLERGGPQAISSVVDTLL
Length1318
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy0.146
Instability index48.98
Isoelectric point7.71
Molecular weight142849.90
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03766
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     349.82|     114|     152|     804|     929|       1
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  804-  929 (175.24/155.21)	PVHQVAnkILSM.ICRKMNKPGVSSGNLSSTSSSSVSGSSVSTSddyqRPTVPA.WefLEAVPFVLEAVLTACAHGRFS.SRDLTTSLRD..LVDFLPASIAAivSYFLAeiTRGIWKM....VPMNGTEWP.SPG
  963- 1086 (174.59/119.92)	PLPMAA..LVSLtITFKLDKSSEYIHAISGQALENCAGGSSWPS....MPIIAAlW..TQKVRRWHDFIILSCLRSPFGrDKDAVAQLIQscFSSFLRSSCSG..SDFTA..NRGVGALmgeaITGHGLQLPmAPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     509.15|     165|     506|     595|     784|       2
---------------------------------------------------------------------------
  595-  784 (258.38/230.06)	CgASFVCGWNIQEYVVRMVV....KL.......LSPPLPSNSSTQGSTSHYLAQMSTLNALLLGISyGDAIHIISLYGmvPDVAAALMPICEvfGSIPPPSNHKPAIVGeisvYSVFSCAFLCLLRLWkfykppqeyclagrgGSVRLELTLDYLLLMR.....NNHIDF...........ANSSANSRNSSNNIV..PLNEVPA..QPLYIDSFPK....LRAW
 1093- 1292 (250.77/165.70)	C.RTFHDTYFVSEVILKQVIewadKLangfsssGPPQLKSGRTPLSSAACMAHQVAMLGGGLLCVA.GGPLLVQVLYE..ETLPTLLLSARE..ESMKDPGPVSSTLQG....YAMANMLFFCGSLLW...............GAERTSPVMKLSFLSRrprvvGNHMDFmagvldghillGCDHGTWKAYVSRFVflVVKFVPSwlQDIKLDTLKKiasgLRSW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     203.94|      53|     156|     384|     438|       3
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  384-  438 (84.33/52.96)	LRLVQRArePLEGPIPHLDSRLCMLLALIPLSIGAILKE..EADVHGAQ.GSKSLPKK
  500-  541 (53.07/26.77)	............GNMLHLIVEACISRNLI..DTSAYLWP..GYVVSSGHlKDATLPQE
  545-  592 (66.54/36.02)	LNFMQGA..PLSGPL..IDA....LIA.TPASSTTELDRlyHIALNGSE.EEKSAAAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.16|      40|     155|      80|     119|       4
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   80-  119 (69.81/47.82)	VASR.LLCPLHVLALLTPR...VLPQRRAQPEAYRLYLE.LLRSN
  237-  281 (52.35/33.87)	VADRkIQSFLRLIFLNMPEkfsALSQRLSLVEAHKVELEtLLTAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.80|      35|     163|     287|     322|       6
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  287-  322 (58.44/48.51)	LLMNIRRVSNTAYQPNNKrLLGVLGNMKYGG...SMLGQ
  454-  491 (54.36/39.39)	LLVPPSSVVNAANAAASK.AAAFKANYKSGGgnpAMMGQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03766 with Med33 domain of Kingdom Viridiplantae
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