<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03764

Description Uncharacterized protein
SequenceMQRYAGAGNNSGFSGGGGAGGGGRDSSRLDGSPYSANNYPLSSRRQQQLAPYKLKCDKEPLNNKLGPPDYYPQTPNCPEETLTKEYVQSGYKETVEGIEEAREIVLSQIPYFCKTDIVVKCKEALKKRLRAINESRAQKRKALSQPNKRLRSLSEHVPHGYRRKSLLDVLTRYNVPLLRATWFVKVTYLNQPQVRSTSVSTSAGGSDNHRSNQWTNDVVEYLQQLLDEFCLKEVPPSFREQSSPGLIAGATQVKMKSEAPPAVGDIDEPLVHFKWWYMVRLIQWHLAEELLVPSERVAVEALELLMPVALGMIDIITLSQTYVRMFVEILVRRLSDGPVVDNPKRAHISSVIAELLRYMVLAVPDTFVSLDCFPLPSFVVPDVYSRGALLKITAAGGIAGSKRQDGYRYLSCGYAVCSIQKRSYDLATVANPNFQARGAAKVVQALDKALVTGNLTMAYSSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVESSLICSVYFLCEWATCDYRDCRTSLLQNVKFTGRRDLSQVHLAVSILKNKMDEINTLSRSKSSSRIAVNNTAKGSSLNNTSLAATVSDSSGLRNNAKSVDEKDKKDIFESPGPLHDIIVCWLDQHEVNSAVGFKRVDVLIIELIRSGIFYPQAYVRQLIISGITDKNDTLLDVERKRRHHRILKQLPGSSLFEILEEDRSTDEQHLYEMMSTYSSERRLVLSELSTGQSFDANSRGEYASSSCVPKTSDLLLASGGDKHGRVPEQVEDVKALVSSMLHFTNPHPVEEEHCQIKTNPQGSSASTITQVDTVDMKHDCEDCARTKRQKLDERASPLQGFPLIQSDEEDIWWVRKGTKLHESLKAEPAQKPIKQTSRGRAKVVRKTQSLAQLAASRIEGSQGASTSHLCESKVGCSHHKPTIDVDNVKDVDHMKIVDLSEVGKSLKRLRLLERRSVSSDDKTLLKWRLGDEELLSILYILDICCDLVSGARFLVWLLTKVRGGMATSGQTGRSATHIKNRENQICQVGEALVFSSLLRYENILLATDLLPEVLSASMSRNFVLATARQPASGAFAYTRYFLKKYRDVPSVARWEKSFRTTCDQRLLAELDNGRSVDGDLVSSSGVSAGEEIDEQIRQKLNVRNSRIVPNMKDIIQRQTEEKKGFTAPKSPSVDREDSYQIAHDIVLGLLECIRQNGGASLDGDPSIVTSAVSAIVLNAGHTIAKHLDLSAGNYHGVSSMGSSLSSIRHILHVHISSLCLLKDALGDRFSRVFEIALAVEASSAITATFAPPKMQRNQFQPSPETHDVYGNHTNELSNTGKGFVGRTTKVAAAISALVVGSVIHGVVNLERMVAVLKIKDGLDILHLLRGLRSSTNGVSRSTGTFKMENSVEVLVHWFRILLGNCRTVYDGLVADILGESYVLALSRLQRMLPLSMVLPPAYSIFAMVLWKRYTFSREDVQLYQSLSNAINDITMHQPFRDICFRNTHQLYDLLAADVGDSEFAAMLEMHNPDKGSKAMAFIPLRARLFLNSLVDCKTAGAILGDGSCASESGEAKESELKLSDRLIQLLDTLQPAKFHWQWVELRFLLDEQALLEKVAAGNTSVAEAIQSLSPNAESFALSDSEKGFTEIILSRLLARPDAAPLYSELVHLLGKLQESLVVDVKWLLQGQDALLGRKSTRQQLVHIAQRKGLSTKTQVWKPWGWSSLLSDVIASKSTKRKLEVTSIEEGEVVDDSADAKRPSKATPHNVDRSFEGIRSINKYLTEKALSELMLPCIDRSSAEFRSIFAGDLVKQMGTISEHIKAIARNGTKQSGLVPSGTEAASNKSSSRKGIRGGSPNIGRRAPVGNDPTPPSASALRATVWLRLQFIIRLLPLIMADRSMRHTLASAILGLLSARIIYEDADLPLPPTNTTVLRRDVDSLLEPPLDVLLDRPGESLFERLICVFHALLGNGKPSWLKSKSVSKSTTRTPRDFPAFDSETAEGLQSALDHLELPGIIRRRIQAAMPVLPPSRHPCISCQPPQLSLAALSPLQSGTSTSGPQQKSNSTSWVPTNVSIRNKAAFATQDPEMEVDPWTLLEDGTSCPSVSSGSNSSSGMAGDHGNLKACSWLKGAVRVRRTELTYIGSLDDDS
Length2122
PositionKinase
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.257
Instability index49.74
Isoelectric point8.52
Molecular weight234260.55
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03764
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     241.51|      78|     376|     681|     770|       1
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  681-  770 (113.41/97.10)	PGSSLFE....ILEEDRSTDEQHLYEMMSTYSSERRLvLSELSTGQSFDansrGEYASSSCVPKTSDLllasggDKHGRVPEQVEDVKaLVSSM
 1060- 1141 (128.10/78.97)	PASGAFAytryFLKKYRDVPSVARWEKSFRTTCDQRL.LAELDNGRSVD....GDLVSSSGVSAGEEI......DEQIRQKLNVRNSR.IVPNM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.46|      39|     376|      19|      60|       2
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   19-   60 (66.92/43.89)	AGGGGRDSSRLDGSPYSANNYPLSSRRQQQlapYKLKCDKEP
  394-  432 (70.54/39.13)	AAGGIAGSKRQDGYRYLSCGYAVCSIQKRS...YDLATVANP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.65|      42|     376|     185|     227|       3
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  185-  227 (69.53/41.95)	KVTYLNQPQVRSTsVSTSAGGSDNHRS..NQWTNDVVEYLQQLLD
  567-  610 (66.12/35.83)	KGSSLNNTSLAAT.VSDSSGLRNNAKSvdEKDKKDIFESPGPLHD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     144.76|      45|     376|     888|     936|       4
---------------------------------------------------------------------------
  888-  936 (64.92/51.59)	IEGSqGASTSHLCESKVGCSHHKPTIDVDNVKDvDHMKivDLSEVGKSL
 1269- 1313 (79.84/48.03)	VEAS.SAITATFAPPKMQRNQFQPSPETHDVYG.NHTN..ELSNTGKGF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.63|      42|     667|     986|    1028|       6
---------------------------------------------------------------------------
  986- 1028 (68.13/58.73)	WLLtKVRGGMATSGQTGRSATHIKNRE..NQICQVGEALVFSSLL
 1656- 1699 (71.50/56.23)	WLL.QGQDALLGRKSTRQQLVHIAQRKglSTKTQVWKPWGWSSLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     271.81|      84|     220|    1730|    1819|      13
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 1730- 1819 (133.63/101.70)	KRPSKATPHnVDRSFEGIRSINKYLTEKALSELMLPCIDRssaefRSIFAGDLV...KQMGTISEHIK..AIARNGTKQSGLVPSGTEAASNKSS
 1952- 2040 (138.19/89.92)	KSVSKSTTR.TPRDFPAFDSETAEGLQSALDHLELPGIIR.....RRIQAAMPVlppSRHPCISCQPPqlSLAALSPLQSGTSTSGPQQKSNSTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.55|      10|     436|     437|     446|      14
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  437-  446 (18.10/12.89)	RGAAKVV...QAL
  868-  880 (13.45/ 7.25)	RGRAKVVrktQSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     171.12|      59|    1290|     297|     363|      16
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  297-  363 (79.26/71.16)	VAvEALELLMPVAlgmiDIITLSQTYvRMFVEILVRRLSDGPvvD.NPKRAHISSVIAELLRYMVLAV
 1595- 1654 (91.87/56.92)	VA.EAIQSLSPNA....ESFALSDSE.KGFTEIILSRLLARP..DaAPLYSELVHLLGKLQESLVVDV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.58|      40|     130|    1392|    1431|      18
---------------------------------------------------------------------------
 1392- 1431 (69.66/39.66)	LGNCRT....VYDGLVADILGESYVLALSRLQRMLPLSMVLPPA
 1523- 1566 (61.91/34.43)	LVDCKTagaiLGDGSCASESGEAKESELKLSDRLIQLLDTLQPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.43|      13|     222|     157|     169|      20
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  157-  169 (24.36/14.52)	VPHGYRRKSLLDV
  380-  392 (23.06/13.32)	VPDVYSRGALLKI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03764 with Med12 domain of Kingdom Viridiplantae
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