<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03763

Description Uncharacterized protein
SequenceMQRYAGAGNNSGFSGGGGAGGGGRDSSRLDGSPYSANNYPLSSRRQQQLAPYKLKCDKEPLNNKLGPPDYYPQTPNCPEETLTKEYVQSGYKETVEGIEEAREIVLSQIPYFCKTDIVVKCKEALKKRLRAINESRAQKRKAGQVYGVPLFGSLLIKPGVYPEQRPCNEDTRRKWAEALSQPNKRLRSLSEHVPHGYRRKSLLDVLTRYNVPLLRATWFVKVTYLNQPQVRSTSVSTSAGGSDNHRSNQWTNDVVEYLQQLLDEFCLKEVPPSFREQSSPGLIAGATQVKMKSEAPPAVGDIDEPLVHFKWWYMVRLIQWHLAEELLVPSERVAVEALELLMPVALGMIDIITLSQTYVRMFVEILVRRLSDGPVVDNPKRAHISSVIAELLRYMVLAVPDTFVSLDCFPLPSFVVPDVYSRGALLKITAAGGIAGSKRQDGYRYLSCGYAVCSIQKRSYDLATVANPNFQARGAAKVVQALDKALVTGNLTMAYSSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVESSLICSVYFLCEWATCDYRDCRTSLLQNVKFTGRRDLSQVHLAVSILKNKMDEINTLSRSKSSSRIAVNNTAKGSSLNNTSLAATVSDSSGLRNNAKSVDEKDKKDIFESPGPLHDIIVCWLDQHEVNSAVGFKRVDVLIIELIRSGIFYPQAYVRQLIISGITDKNDTLLDVERKRRHHRILKQLPGSSLFEILEEDRSTDEQHLYEMMSTYSSERRLVLSELSTGQSFDANSRGEYASSSCVPKTSDLLLASGGDKHGRVPEQVEDVKALVSSMLHFTNPHPVEEEHCQIKTNPQGSSASTITQVDTVDMKHDCEDCARTKRQKLDERASPLQGFPLIQSDEEDIWWVRKGTKLHESLKAEPAQKPIKQTSRGRAKVVRKTQSLAQLAASRIEGSQGASTSHLCESKVGCSHHKPTIDVDNVKDVDHMKIVDLSEVGKSLKRLRLLERRSVSVWLLKSVRQLIEVNEMAASKATNSINSFSSQSDDKTLLKWRLGDEELLSILYILDICCDLVSGARFLVWLLTKVRGGMATSGQTGRSATHIKNRENQICQVGEALVFSSLLRYENILLATDLLPEVLSASMSRNFVLATARQPASGAFAYTRYFLKKYRDVPSVARWEKSFRTTCDQRLLAELDNGRSVDGDLVSSSGVSAGEEIDEQIRQKLNVRNSRIVPNMKDIIQRQTEEKKGFTAPKSPSVDREDSYQIAHDIVLGLLECIRQNGGASLDGDPSIVTSAVSAIVLNAGHTIAKHLDLSAGNYHGVSSMGSSLSSIRHILHVHISSLCLLKDALGDRFSRVFEIALAVEASSAITATFAPPKMQRNQFQPSPETHDVYGNHTNELSNTGKGFVGRTTKVAAAISALVVGSVIHGVVNLERMVAVLKIKDGLDILHLLRGLRSSTNGVSRSTGTFKMENSVEVLVHWFRILLGNCRTVYDGLVADILGESYVLALSRLQRMLPLSMVLPPAYSIFAMVLWKRYTFSREDVQLYQSLSNAINDITMHQPFRDICFRNTHQLYDLLAADVGDSEFAAMLEMHNPDKGSKAMAFIPLRARLFLNSLVDCKTAGAILGDGSCASESGEAKESELKLSDRLIQLLDTLQPAKFHWQWVELRFLLDEQALLEKVAAGNTSVAEAIQSLSPNAESFALSDSEKGFTEIILSRLLARPDAAPLYSELVHLLGKLQESLVVDVKWLLQGQDALLGRKSTRQQLVHIAQRKGLSTKTQVWKPWGWSSLLSDVIASKSTKRKLEVTSIEEGEVVDDSADAKRPSKATPHNVDRSFEGIRSINKYLTEKALSELMLPCIDRSSAEFRSIFAGDLVKQMGTISEHIKAIARNGTKQSGLVPSGTEAASNKSSSRKGIRGGSPNIGRRAPVGNDPTPPSASALRATVWLRLQFIIRLLPLIMADRSMRHTLASAILGLLSARIIYEDADLPLPPTNTTVLRRDVDSLLEPPLDVLLDRPGESLFERLICVFHALLGNGKPSWLKSKSVSKSTTRTPRDFPAFDSETAEGLQSALDHLELPGIIRRRIQAAMPVLPPSRHPCISCQPPQLSLAALSPLQSGTSTSGPQQKSNSTSWVPTNVSIRNKAAFATQDPEMEVDPWTLLEDGTSCPSVSSGSNSSSGMAGDHGNLKACSWLKGAVRVRRTELTYIGSLDDDS
Length2189
PositionKinase
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.259
Instability index49.47
Isoelectric point8.57
Molecular weight241752.03
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03763
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     193.71|      65|     305|     521|     689|       1
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  547-  618 (87.95/90.87)	DYRDCRTSlLQNVKFTGRRDLSqVHLAVSIlkNKMDEINTLSRSKSSSRIavnNTAKGSSLNNTSLAATVSD
  964- 1028 (105.76/51.26)	DLSEVGKS.LKRLRLLERRSVS.VWLLKSV..RQLIEVNEMAASKATNSI...NSFSSQSDDKTLLKWRLGD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     219.40|      71|     527|     624|     827|       2
---------------------------------------------------------------------------
  753-  827 (116.47/138.75)	ELSTGQSFDANSRGEYASS....SCVPKTSDLLLASG.GDKHGRVPEQVEDVKAlvSSMLHFTNPHP.VEEEhcQIKTNPQ
 1285- 1361 (102.93/64.99)	DLSAGNYHGVSSMGSSLSSirhiLHVHISSLCLLKDAlGDRFSRVFEIALAVEA..SSAITATFAPPkMQRN..QFQPSPE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     526.16|     171|     668|    1053|    1232|       3
---------------------------------------------------------------------------
 1053- 1232 (256.31/202.66)	WLLtKVRGGMATSGQTGRSATHIKNRE..NQICQVGEALVFSSLLryENILLATDLLPEVLSASMSRNFVLATARQPASGAFAYTRYFLKKYRDVPSVARW..EKSFRT...TCDQRLLAELDNgrSVDGDLVSSSGvSAGEEIDEQIRQklNVRNSRIVPNMKDIIQRQTEEKKGFTAPkSPSVDR
 1723- 1900 (269.85/181.17)	WLL.QGQDALLGRKSTRQQLVHIAQRKglSTKTQVWKPWGWSSLL..SDVIASKSTKRKLEVTSIEEGEVVDDSADAKRPSKATPHNVDRSFEGIRSINKYltEKALSElmlPCIDRSSAEFRS..IFAGDLVKQMG.TISEHIKAIARN..GTKQSGLVPSGTEAASNKSSSRKGIRGG.SPNIGR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     319.99|     106|     532|      89|     201|       4
---------------------------------------------------------------------------
   89-  201 (163.26/147.97)	SGYKETVEGIEE..AREIVLSQIPYFcktDIVVkCKEALKKRLRAINESRA.....QKRKAGQVYGVPLFGSLLIkPGVYPEQRPCNE.DTRRKWAEALSQ.PNKRL.......RSLSEHvpHGYRRKS
  620-  741 (156.73/116.53)	SGLRNNAKSVDEkdKKDIFESPGPLH...DIIV.CWLDQHEVNSAVGFKRVdvliiELIRSGIFYPQAYVRQLII.SGITDKNDTLLDvERKRRHHRILKQlPGSSLfeileedRSTDEQ..HLYEMMS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.99|      33|      60|    2080|    2116|       6
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 2080- 2116 (52.73/33.55)	PQLSlaalSPLQSGTSTSGPQQKSNSTSWVPTNVSIR
 2143- 2175 (58.25/29.67)	PSVS....SGSNSSSGMAGDHGNLKACSWLKGAVRVR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.58|      40|      64|    1579|    1642|       9
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 1459- 1498 (69.66/34.90)	LGNCRT....VYDGLVADILGESYVLALSRLQRMLPLSMVLPPA
 1590- 1633 (61.91/56.50)	LVDCKTagaiLGDGSCASESGEAKESELKLSDRLIQLLDTLQPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.46|      39|     414|      19|      60|      10
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   19-   60 (66.92/36.56)	AGGGGRDSSRLDGSPYSANNYPLSSRRQQQlapYKLKCDKEP
  430-  468 (70.54/32.59)	AAGGIAGSKRQDGYRYLSCGYAVCSIQKRS...YDLATVANP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03763 with Med12 domain of Kingdom Viridiplantae
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