<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03762

Description Uncharacterized protein
SequenceMQRYAGAGNNSGFSGGGGAGGGGRDSSRLDGSPYSANNYPLSSRRQQQLAPYKLKCDKEPLNNKLGPPDYYPQTPNCPEETLTKEYVQSGYKETVEGIEEAREIVLSQIPYFCKTDIVVKCKEALKKRLRAINESRAQKRKALSQPNKRLRSLSEHVPHGYRRKSLLDVLTRYNVPLLRATWFVKVTYLNQPQVRSTSVSTSAGGSDNHRSNQWTNDVVEYLQQLLDEFCLKEVPPSFREQSSPGLIAGATQVKMKSEAPPAVGDIDEPLVHFKWWYMVRLIQWHLAEELLVPSERVAVEALELLMPVALGMIDIITLSQTYVRMFVEILVRRLSDGPVVDNPKRAHISSVIAELLRYMVLAVPDTFVSLDCFPLPSFVVPDVYSRGALLKITAAGGIAGSKRQDGYRYLSCGYAVCSIQKRSYDLATVANPNFQARGAAKVVQALDKALVTGNLTMAYSSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVESSLICSVYFLCEWATCDYRDCRTSLLQNVKFTGRRDLSQVHLAVSILKNKMDEINTLSRSKSSSRIAVNNTAKGSSLNNTSLAATVSDSSGLRNNAKSVDEKDKKDIFESPGPLHDIIVCWLDQHEVNSAVGFKRVDVLIIELIRSGIFYPQAYVRQLIISGITDKNDTLLDVERKRRHHRILKQLPGSSLFEILEEDRSTDEQHLYEMMSTYSSERRLVLSELSTGQSFDANSRGEYASSSCVPKTSDLLLASGGDKHGRVPEQVEDVKALVSSMLHFTNPHPVEEEHCQIKTNPQGSSASTITQVDTVDMKHDCEDCARTKRQKLDERASPLQGFPLIQSDEEDIWWVRKGTKLHESLKAEPAQKPIKQTSRGRAKVVRKTQSLAQLAASRIEGSQGASTSHLCESKVGCSHHKPTIDVDNVKDVDHMKIVDLSEVGKSLKRLRLLERRSVSSDDKTLLKWRLGDEELLSILYILDICCDLVSGARFLVWLLTKVRGGMATSGQTGRSATHIKNRENQICQVGEALVFSSLLRYENILLATDLLPEVLSASMSRNFVLATARQPASGAFAYTRYFLKKYRDVPSVARWEKSFRTTCDQRLLAELDNGRSVDGDLVSSSGVSAGEEIDEQIRQKLNVRNSRIVPNMKDIIQRQTEEKKGFTAPKSPSVDREDSYQIAHDIVLGLLECIRQNGGASLDGDPSIVTSAVSAIVLNAGHTIAKHLDLSADALGDRFSRVFEIALAVEASSAITATFAPPKMQRNQFQPSPETHDVYGNHTNELSNTGKGFVGRTTKVAAAISALVVGSVIHGVVNLERMVAVLKIKDGLDILHLLRGLRSSTNGVSRSTGTFKMENSVEVLVHWFRILLGNCRTVYDGLVADILGESYVLALSRLQRMLPLSMVLPPAYSIFAMVLWKRYTFSREDVQLYQSLSNAINDITMHQPFRDICFRNTHQLYDLLAADVGDSEFAAMLEMHNPDKGSKAMAFIPLRARLFLNSLVDCKTAGAILGDGSCASESGEAKESELKLSDRLIQLLDTLQPAKFHWQWVELRFLLDEQALLEKVAAGNTSVAEAIQSLSPNAESFALSDSEKGFTEIILSRLLARPDAAPLYSELVHLLGKLQESLVVDVKWLLQGQDALLGRKSTRQQLVHIAQRKGLSTKTQVWKPWGWSSLLSDVIASKSTKRKLEVTSIEEGEVVDDSADAKRPSKATPHNVDRSFEGIRSINKYLTEKALSELMLPCIDRSSAEFRSIFAGDLVKQMGTISEHIKAIARNGTKQSGLVPSGTEAASNKSSSRKGIRGGSPNIGRRAPVGNDPTPPSASALRATVWLRLQFIIRLLPLIMADRSMRHTLASAILGLLSARIIYEDADLPLPPTNTTVLRRDVDSLLEPPLDVLLDRPGESLFERLICVFHALLGNGKPSWLKSKSVSKSTTRTPRDFPAFDSETAEGLQSALDHLELPGIIRRRIQAAMPVLPPSRHPCISCQPPQLSLAALSPLQSGTSTSGPQQKSNSTSWVPTNVSIRNKAAFATQDPEMEVDPWTLLEDGTSCPSVSSGSNSSSGMAGDHGNLKACSWLKGAVRVRRTELTYIGSLDDDS
Length2091
PositionKinase
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.267
Instability index49.29
Isoelectric point8.45
Molecular weight230944.73
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03762
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.46|      39|     362|      19|      60|       1
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   19-   60 (66.92/57.10)	AGGGGRDSSRLDGSPYSANNYPLSSRRQQQlapYKLKCDKEP
  394-  432 (70.54/50.95)	AAGGIAGSKRQDGYRYLSCGYAVCSIQKRS...YDLATVANP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     263.36|     107|    1163|     539|     689|       2
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  544-  689 (148.60/162.91)	KMDE...INTLSRSKSSSRIAVNNTAKGSSLNntslaatvSDSSGLRNNAKSVdEKDKKDIFESPGPLH................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................diivcwldqhevnsavgfkrvdvlIIELIRSGIFYPQAYvrqliiSGITDKNDTLL..DVERKR.RHHRILKQLPGSSLFEIL
  694-  753 (64.92/22.78)	STDEqhlYEMMSTYSSERRLVLSELSTGQSFD........ANSRGEYASSSCV.PKTSDLLLASGGDKH...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
 1850- 1902 (49.83/14.65)	.....................................................................grvpeqvedvkalvssmlhftnphpveeehcqiktnpqgssastitqvdtvdmkhdcedcartkrqklderasplqgfpliqsdeediwwvrkgtklheslkaepaqkpikqtsrgrakvvrktqslaqlaasriegsqgastshlceskvgcshhkptidvdnvkdvdhmkivdlsevgkslkrlrllerrsvssddktllkwrlgdeellsilyildiccdlvsgarflvwlltkvrggmatsgqtgrsathiknrenqicqvgealvfssllryenillatdllpevlsasmsrnfvlatarqpasgafaytryflkkyrdvpsvarweksfrttcdqrllaeldngrsvdgdlvsssgvsageeideqirqklnvrnsrivpnmkdiiqrqteekkgftapkspsvdredsyqiahdivlgllecirqnggasldgdpsivtsavsaivlnaghtiakhldlsadalgdrfsrvfeialaveassaitatfappkmqrnqfqpspethdvygnhtnelsntgkgfvgrttkvaaaisalvvgsvihgvvnlermvavlkikdgldilhllrglrsstngvsrstgtfkmensvevlvhwfrillgncrtvydglvadilgesyvlalsrlqrmlplsmvlppaysifamvlwkrytfsredvqlyqslsnainditmhqpfrdicfrnthqlydllaadvgdsefaamlemhnpdkgskamafiplrarlflnslvdcktagailgdgscasesgeakeselklsdrliqlldtlqpakfhwqwvelrflldeqallekvaagntsvaeaiqslspnaesfalsdsekgfteiilsrllarpdaaplyselvhllgklqeslvvdvkwllqgqdallgrkstrqqlvhiaqrkglstktqvwkpwgwssllsdviaskstkrklevtsieegevvddsadakrpskatphnvdrsfegirsinkyltekalselmlpcidrssaefrsifagdlvkqmgtisehikaiarngtkqsglvpsgteaasnksssrkgirggspnigrrapvgndptppsasalratvwlrlqfiirllplimadrsmrhtlasaILGLLSARIIYEDAD......LPLPPTNTTVLrrDVDSLLePPLDVLLDRPGESLFERL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     526.16|     171|     637|     986|    1165|       3
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  986- 1165 (256.31/183.62)	WLLtKVRGGMATSGQTGRSATHIKNRE..NQICQVGEALVFSSLLryENILLATDLLPEVLSASMSRNFVLATARQPASGAFAYTRYFLKKYRDVPSVARW..EKSFRT...TCDQRLLAELDNgrSVDGDLVSSSGvSAGEEIDEQIRQklNVRNSRIVPNMKDIIQRQTEEKKGFTAPkSPSVDR
 1625- 1802 (269.85/164.15)	WLL.QGQDALLGRKSTRQQLVHIAQRKglSTKTQVWKPWGWSSLL..SDVIASKSTKRKLEVTSIEEGEVVDDSADAKRPSKATPHNVDRSFEGIRSINKYltEKALSElmlPCIDRSSAEFRS..IFAGDLVKQMG.TISEHIKAIARN..GTKQSGLVPSGTEAASNKSSSRKGIRGG.SPNIGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.17|      33|      89|    1173|    1206|       4
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 1173- 1206 (52.32/45.13)	HDiVLGLLECIRQNGGASLDGDPSIVTSAVSAIV
 1265- 1297 (56.86/43.74)	HD.VYGNHTNELSNTGKGFVGRTTKVAAAISALV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     155.67|      50|    1163|     807|     862|       5
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  807-  862 (77.40/63.14)	KHDCEDCartKRQKLDERA.SPLQ.GF....PLIQSDEEDiwWVRKGTKLHESlKAEPAQKP
 1973- 2028 (78.27/45.70)	RHPCISC...QPPQLSLAAlSPLQsGTstsgPQQKSNSTS..WVPTNVSIRNK.AAFATQDP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     391.58|     131|    1263|     221|     363|       6
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  221-  363 (193.79/189.98)	YLQQLLDefClKEVPPSFREQSSPGLIAGATQVKMK.SEAPPAVGDIDEPlVHFKW.WYMVRLI..QWHLAEELLVPSERVAvEALELLMPVAlgmiDIITLSQTYvRMFVEILVRRLSDGPvvD.NPKRAHISSVIAELLRYMVLAV
 1488- 1623 (197.79/149.98)	FLNSLVD..C.KTAGAILGDGSCASESGEAKESELKlSDRLIQLLDTLQP.AKFHWqWVELRFLldEQALLEKVAAGNTSVA.EAIQSLSPNA....ESFALSDSE.KGFTEIILSRLLARP..DaAPLYSELVHLLGKLQESLVVDV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.55|      10|     429|     437|     446|      10
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  437-  446 (18.10/11.27)	RGAAKVV...QAL
  868-  880 (13.45/ 6.37)	RGRAKVVrktQSL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.70|      18|     848|     500|     517|      13
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  500-  517 (37.74/28.59)	SVYFLCEWATCDYRDCRT
 1349- 1366 (33.96/24.86)	SVEVLVHWFRILLGNCRT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03762 with Med12 domain of Kingdom Viridiplantae
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