<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03761

Description Uncharacterized protein
SequenceMQRYAGAGNNSGFSGGGGAGGGGRDSSRLDGSPYSANNYPLSSRRQQQLAPYKLKCDKEPLNNKLGPPDYYPQTPNCPEETLTKEYVQSGYKETVEGIEEAREIVLSQIPYFCKTDIVVKCKEALKKRLRAINESRAQKRKAGQVYGVPLFGSLLIKPGVYPEQRPCNEDTRRKWAEALSQPNKRLRSLSEHVPHGYRRKSLLDVLTRYNVPLLRATWFVKVTYLNQPQVRSTSVSTSAGGSDNHRSNQWTNDVVEYLQQLLDEFCLKEVPPSFREQSSPGLIAGATQVKMKSEAPPAVGDIDEPLVHFKWWYMVRLIQWHLAEELLVPSERVAVEALELLMPVALGMIDIITLSQTYVRMFVEILVRRLSDGPVVDNPKRAHISSVIAELLRYMVLAVPDTFVSLDCFPLPSFVVPDVYSRGALLKITAAGGIAGSKRQDGYRYLSCGYAVCSIQKRSYDLATVANPNFQARGAAKVVQALDKALVTGNLTMAYSSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVESSLICSVYFLCEWATCDYRDCRTSLLQNVKFTGRRDLSQVHLAVSILKNKMDEINTLSRSKSSSRIAVNNTAKGSSLNNTSLAATVSDSSGLRNNAKSVDEKDKKDIFESPGPLHDIIVCWLDQHEVNSAVGFKRVDVLIIELIRSGIFYPQAYVRQLIISGITDKNDTLLDVERKRRHHRILKQLPGSSLFEILEEDRSTDEQHLYEMMSTYSSERRLVLSELSTGQSFDANSRGEYASSSCVPKTSDLLLASGGDKHGRVPEQVEDVKALVSSMLHFTNPHPVEEEHCQIKTNPQGSSASTITQVDTVDMKHDCEDCARTKRQKLDERASPLQGFPLIQSDEEDIWWVRKGTKLHESLKAEPAQKPIKQTSRGRAKVVRKTQSLAQLAASRIEGSQGASTSHLCESKVGCSHHKPTIDVDNVKDVDHMKIVDLSEVGKSLKRLRLLERRSVSSDDKTLLKWRLGDEELLSILYILDICCDLVSGARFLVWLLTKVRGGMATSGQTGRSATHIKNRENQICQVGEALVFSSLLRYENILLATDLLPEVLSASMSRNFVLATARQPASGAFAYTRYFLKKYRDVPSVARWEKSFRTTCDQRLLAELDNGRSVDGDLVSSSGVSAGEEIDEQIRQKLNVRNSRIVPNMKDIIQRQTEEKKGFTAPKSPSVDREDSYQIAHDIVLGLLECIRQNGGASLDGDPSIVTSAVSAIVLNAGHTIAKHLDLSADALGDRFSRVFEIALAVEASSAITATFAPPKMQRNQFQPSPETHDVYGNHTNELSNTGKGFVGRTTKVAAAISALVVGSVIHGVVNLERMVAVLKIKDGLDILHLLRGLRSSTNGVSRSTGTFKMENSVEVLVHWFRILLGNCRTVYDGLVADILGESYVLALSRLQRMLPLSMVLPPAYSIFAMVLWKRYTFSREDVQLYQSLSNAINDITMHQPFRDICFRNTHQLYDLLAADVGDSEFAAMLEMHNPDKGSKAMAFIPLRARLFLNSLVDCKTAGAILGDGSCASESGEAKESELKLSDRLIQLLDTLQPAKFHWQWVELRFLLDEQALLEKVAAGNTSVAEAIQSLSPNAESFALSDSEKGFTEIILSRLLARPDAAPLYSELVHLLGKLQESLVVDVKWLLQGQDALLGRKSTRQQLVHIAQRKGLSTKTQVWKPWGWSSLLSDVIASKSTKRKLEVTSIEEGEVVDDSADAKRPSKATPHNVDRSFEGIRSINKYLTEKALSELMLPCIDRSSAEFRSIFAGDLVKQMGTISEHIKAIARNGTKQSGLVPSGTEAASNKSSSRKGIRGGSPNIGRRAPVGNDPTPPSASALRATVWLRLQFIIRLLPLIMADRSMRHTLASAILGLLSARIIYEDADLPLPPTNTTVLRRDVDSLLEPPLDVLLDRPGESLFERLICVFHALLGNGKPSWLKSKSVSKSTTRTPRDFPAFDSETAEGLQSALDHLELPGIIRRRIQAAMPVLPPSRHPCISCQPPQLSLAALSPLQSGTSTSGPQQKSNSTSWVPTNVSIRNKAAFATQDPEMEVDPWTLLEDGTSCPSVSSGSNSSSGMAGDHGNLKACSWLKGAVRVRRTELTYIGSLDDDS
Length2127
PositionKinase
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.272
Instability index49.00
Isoelectric point8.48
Molecular weight235002.32
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03761
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.19|      32|     432|      19|      50|       1
---------------------------------------------------------------------------
   19-   50 (59.13/31.87)	AGGGGRDSSRLDGSPYSANNYPLSS..RRQQQLA
  430-  463 (55.06/29.18)	AAGGIAGSKRQDGYRYLSCGYAVCSiqKRSYDLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     161.45|      52|     432|    1158|    1217|       2
---------------------------------------------------------------------------
  854-  876 (32.24/10.83)	RQKLDERASPL...............QGFP.LIQS...DEED................
 1163- 1217 (79.71/65.85)	RQKLNVRNSRIvPNMKDIIQRQTEekKGFT.APKSPSVDREDSYQIAHDIV..LGLLE
 1609- 1652 (49.49/25.95)	............PNAESFALSDSE..KGFTeIILSRLLARPDAAPLYSELVhlLGKLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     402.42|     131|     637|    1022|    1158|       3
---------------------------------------------------------------------------
 1022- 1158 (197.96/154.96)	WLLtKVRGGMATSGQTGRSATHIKNRE..NQICQVGEALVFSSLLryENILLATDLLPEVLSASMSRNFVLATARQPASGAFAYTRYFLKKYRDVPSVARW..EKSFRT...TCDQRLLAELDNgrSVDGDLVSSSGvSAGEEI
 1661- 1798 (204.46/137.98)	WLL.QGQDALLGRKSTRQQLVHIAQRKglSTKTQVWKPWGWSSLL..SDVIASKSTKRKLEVTSIEEGEVVDDSADAKRPSKATPHNVDRSFEGIRSINKYltEKALSElmlPCIDRSSAEFRS..IFAGDLVKQMG.TISEHI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.62|      18|     306|     591|     621|       5
---------------------------------------------------------------------------
  600-  617 (29.71/36.60)	NTAKGSSLNNTSLAATVS
 1313- 1330 (30.91/ 6.98)	NTGKGFVGRTTKVAAAIS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03761 with Med12 domain of Kingdom Viridiplantae
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