<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03760

Description Uncharacterized protein
SequenceMAPPSMDYWLGFFRGAGDNIFDAIDAAIAVAASDHPAALRSRRDAIAERLYTAHLVSGAPAAVPPAGGAATEAPPAQLLHPEGAASVPSLCSSDRAEVITDDGGVPRREDPVAAETERIKAVLLNDQEKSEATLLELLRRLQQLELTVDTLTVTEIGKAVSSYRKHNSKQIRHLVRLLIEGWKRIVDEWMSSRDAIVDHTPQSMHPSGLEQDERGLSSPSMDEGALFATPSTSIRLSEENQGSKFFDGMDDDGNTRHNGGRDSRLYTRNQEPARRPLPPMAQQYDPDQSWKQEQSAMRQSRPQELSNGQTREQFIATMLARPSNPESGPGRPQLRTKQHQDASPAQGRSQPMPSDKLASHHDENSVRAKLELAKNAKLELTNSAKLEVTKRKLQEGYQEFDNAKKQRTIQMVDPQNLPKQANRNWQPNGKPRNNSNLNNNRNWSR
Length445
PositionUnknown
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.882
Instability index61.96
Isoelectric point6.86
Molecular weight49439.44
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03760
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.77|      21|      43|      58|      79|       1
---------------------------------------------------------------------------
   58-   79 (33.75/21.91)	GAPAAVPPAgGAATEAPPAQLL
  104-  124 (35.02/18.08)	GVPRREDPV.AAETERIKAVLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.79|      47|     212|     167|     216|       2
---------------------------------------------------------------------------
  165-  214 (74.49/56.41)	KHNSKQIRHLVRLLIEGWK.RIVDEWMSSR..DAIvDHTPQSMHPSGleQDER
  215-  264 (71.30/44.16)	GLSSPSMDEGALFATPSTSiRLSEENQGSKffDGM.DDDGNTRHNGG..RDSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.77|      13|      17|     301|     317|       3
---------------------------------------------------------------------------
  301-  313 (23.66/16.76)	RPQELSNGQTREQ
  321-  333 (26.11/ 8.83)	RPSNPESGPGRPQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03760 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSEENQGSKFFDGMDDDGNTRHNGGRDSRLYTRNQEPARRPLPPMAQQYDPDQSWKQEQSAMRQSRPQELSNGQTREQFIATMLARPSNPESGPGRPQLRTKQHQDASPAQGRSQPMPSDKLASHHDENSVRAKLELAKNAKLELTNSAKLEVTKRKLQEGYQEFDNAKKQRTIQMVDPQNLPKQANRNWQPNGKPRNNSNLNNNRNWSR
2) RDAIVDHTPQSMHPSGLEQDERGLSSPSMDEGALFATPSTSI
236
193
445
234










Molecular Recognition Features






MoRF SequenceStartStop




1) DYWLG
7
11