<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03759

Description Uncharacterized protein
SequenceMADGGGGGYDLLTALPDDVLRLPSTAEAARTSVLSRRWRSLWTNLPELRFADVTDLASPPRIRSSPSSTWPRSSSRASSASTSSRRRRRRRGRPGSEARFRSHASRRPRRSPSAYAAASASSCHHPAFDSQYQRDLGDAVSSEVCASLRELCICYADVVSNLAIRSESLRLVQLHRLEGLHQLTISAPVLRELDLFARFVRRIPIAHISAPALETLHWVDLFSSSSVRFDETPNVHRLSAYGIVYGHIITPDSLPLVQHFEAARDVHLTLIHPSDGEVPCSDGCFCYKPRVWENKNIRLNFLQNVEINNLSGAECQIYFVKRLLRWTPVLKTITLGFDPSVTVSEEVSNELLSFSTPGICMEIYLHRDGARSGRIIAVFIATDGICSPVFCLLLPFSTMFTHQNTPSMDAMVDEMSKAYQELVAAAKAIQEARWQPGGENTVTMDAAHEAFEQLRELFLVACDHADVLVQSVLHSVVSDPECFVDGARAITPDEDSVRSPTRYSASSSSSGFSALPDEVLCLILLRLPSAAAAARTSLISRRWRNLWAILLPNLRFPDVTDLARVTAALHLHHASPFLLLHISCSDPAPDKIAAVLDLAAPRLEGELCFDINTPPPATVAASGAAGIGGAIQIPCFEKATEITIRFGGRLGIRLPPSGVFAKLTVLGLRDIRFDSQLDVGVVISSGRCPSLQELRLDNSQVMSNLAIGSASLRLVHLSKLEGMKQLMIFAPVLTELAVSCCFDMRIPIADISAPALETLCWVDLFSWRSVRFSAMPNVHRLAAYGVVYGDDFVQDAQSLPLLQHFKAARNVRLSLVYPYSLVNYEYLIDGISISMLPDNIEILSLILTTRGHTFGPCAFHFLKMSTSIRGLQLIFDDNLEDKVLCSSGCICYKPQDWETMDIFLSFLENVEINRMTGAECDICFVKRLLRWTPVLKTITLIFHPSVTISEEVCEGLCSLSSAGVCMEIYLHRNGVKTNQTHIVPGSIIPQALKHFKERPAVGGRRCWSAGGGGGRREAGRRPRRSAVERRATSGGGGRGRRRRWAASGGGASGGGVGPNGVRGGWRWREGRSGAASLEGEAGGGGKGGAGRRRWRERPAASVEAGGGARGCDGSVWL
Length1117
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.036
Instability index62.01
Isoelectric point8.62
Molecular weight122153.46
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03759
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     122.00|      22|      22|    1031|    1052|       1
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 1002- 1015 (32.09/11.30)	GGRR..CW.......S...A.G.GG.GGR
 1019- 1038 (30.01/10.13)	GRRP..RRSAVE...R..rATS.GG.GGR
 1039- 1059 (31.76/11.12)	GRRR..RWAASGGGAS......gGGvGPN
 1060- 1086 (28.14/ 9.08)	GVRGgwRWREGRSGAAsleGEA.GG.GGK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     127.95|      26|      28|     194|     219|       2
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  185-  200 (24.40/10.14)	.......ISAPVLREL...DLFA....RFV
  201-  229 (42.39/22.82)	RRIPIAHISAPALETLHWVDLFSsssvRF.
  728-  743 (20.09/ 7.10)	.......IFAPVLTEL...AVSC....CFD
  744-  772 (41.08/21.90)	MRIPIADISAPALETLCWVDLFSwrsvRF.
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     732.03|     138|     603|     234|     371|       3
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  145-  269 (89.76/56.82)	...........CAslrEL.CICYAD.......VVSNLAIRSESLRLVQLHRLEG.........................................................lhqltisapvlreldlfarfvrripiahisapaletlhwvdlfssssvrfDET................................................P....................NVHRLSAYGIVY...GHIITPD..SL..P...LVQHFEAARDVHLT
  270-  402 (220.04/151.40)	LIHPS.DGEVPCS...DG.CFCYKP......RVWENKNIRLNFLQNVEINNLSGAECQIYFVKRLLRWTP.VLKTITLGFDPSVTVSEEVSN.ELLSFSTPGICMEIYLHR..................................................DGA................................................R....................S.......GRII...AVFIATD..GIcsPvfcLLLPFST...MFTH
  403-  475 (73.80/45.23)	QNTPSmDAMV..D...EM.SKAYQE......LVAAAKAIQEA........................RWQPgGENTVTM..DAAHEAFEQLRElFLVACDHADVLVQSVLHS........................................................................................................................................................................
  673-  814 (102.79/66.28)	FDSQL.DVGVVIS...SGrCPSLQElrldnsQVMSNLAIGSASLRLVHLSKLEG.......MKQLM..................................................................................................ifapvltelavsccfdmripiadisapaletlcwvdlfswrsvrfsamP....................NVHRLAAYGVVY...GDDFVQDaqSL..P...LLQHFKAARNVRLS
  815-  874 (45.20/24.47)	LVYP.................................................................................................................................................................................................................yslvnyeylidgisismlpdNIEILSLILTTR...GHTFGPC..AF..H...FLKMSTSIRGLQLI
  875-  996 (200.45/137.18)	FDDNL.EDKVLCS...SG.CICYKP......QDWETMDIFLSFLENVEINRMTGAECDICFVKRLLRWTP.VLKTITLIFHPSVTISEEVCE.GLCSLSSAGVCMEIYLHR..................................................NGV................................................K................................tnqTHIVPGS..II..P..qALKHFK........
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.76|      26|      26|     584|     609|       4
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  557-  571 (20.13/ 6.94)	.....PD....VTDLA..RVTAAL...HL
  584-  609 (48.49/26.90)	CSDPAPDKIAAVLDLAAPRLEGEL...CF
  611-  636 (34.15/16.81)	INTPPPATVAAS...GAAGIGGAIqipCF
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.80|      13|      21|      71|      89|       5
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   71-   85 (18.76/ 7.19)	PRSSSRasSASTSSR
   94-  106 (22.04/ 9.77)	PGSEAR..FRSHASR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.20|      40|     503|       2|      50|       6
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    2-   44 (74.62/43.57)	ADGGGGGYdllTALPDDV.....LRLPSTAEAARTSVLSRRWRSLWTN
  505-  549 (70.58/34.27)	ASSSSSGF...SALPDEVlclilLRLPSAAAAARTSLISRRWRNLWAI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03759 with Med32 domain of Kingdom Viridiplantae
Unable to open file!