<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03758

Description Uncharacterized protein
SequenceMADGGGGGYDLLTALPDDVLRLPSTAEAARTSVLSRRWRSLWTNLPELRFADVTDLASPPRIRSSPSSTWPRSSSRASSASTSSRRRRRRRGRPGSEARFRSHASRRPRRSPSAYAAASASSCHHPAFDSQYQRDLGDAVSSEVCASLRELCICYADVVSNLAIRSESLRLVQLHRLEGLHQLTISAPVLRELDLFARFVRRIPIAHISAPALETLHWVDLFSSSSVRFDETPNVHRLSAYGIVPRVSYKLLVKAVNKLPAVEILFLRLLTIGHTFGPCVFHLLRMSTGIRELKLQLEDHIADGEVPCSDGCFCYKPRVWENKNIRLNFLQNVEINNLSGAECQIYFVKRLLRWTPVLKTITLGFDPSVTVSEEVSNELLSFSTPGICMEIYLHRDGARSGRIIAVFIATDGICSPVFCLLLPFSTMFTHQNTPSMDAMVDEMSKAYQELVAAAKAIQEARWQPGGENTVTMDAAHEAFEQLRELFLVACDHADVLVQSVLHSVVSDPECFVDGARAITPDEDSVRSPTRYSASSSSSGFSALPDEVLCLILLRLPSAAAAARTSLISRRWRNLWAILLPNLRFPDVTDLARVTAALHLHHASPFLLLHISCSDPAPDKIAAVLDLAAPRLEGELCFDINTPPPATVAASGAAGIGGAIQIPCFEKATEITIRFGGRLGIRLPPSGVFAKLTVLGLRDIRFDSQLDVGVVISSGRCPSLQELRLDNSQVMSNLAIGSASLRLVHLSKLEGMKQLMIFAPVLTELAVSCCFDMRIPIADISAPALETLCWVDLFSWRSVRFSAMPNVHRLAAYGVVYGDDFVQDAQSLPLLQHFKAARNVRLSLVYPYSLVNYEYLIDGISISMLPDNIEILSLILTTRGHTFGPCAFHFLKMSTSIRGLQLIFDDNLEDKVLCSSGCICYKPQDWETMDIFLSFLENVEINRMTGAECDICFVKRLLRWTPVLKTITLIFHPSVTISEEVCEGLCSLSSAGVCMEIYLHRNGVKTNQTHIVPGSIIPQALKHFKERPAVGGRRCWSAGGGGGRREAGRRPRRSAVERRATSGGGGRGRRRRWAASGGGASGGGVGPNGVRGGWRWREGRSGAASLEGEAGGGGKGGAGRRRWRERPAASVEAGGGARGCDGSVWL
Length1145
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.013
Instability index61.97
Isoelectric point8.87
Molecular weight125385.59
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03758
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      93.56|      17|      28|     194|     210|       1
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  194-  210 (31.85/19.74)	DLFA....RFVRRIP.IAH.ISA
  220-  240 (20.72/10.13)	DLFSsssvRF.DETP.NVHrLSA
  791-  811 (19.74/ 9.29)	DLFSwrsvRF.SAMP.NVHrLAA
  818-  835 (21.25/10.59)	DDFV....QDAQSLPlLQH.FKA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     683.34|     138|     604|     247|     399|       2
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  128-  193 (43.97/16.62)	.........................................FDSQyqrdLGD.AVsseVCASlreL.CICY.......ADVVSNLAIRSESLRLVQLHRLEG.......LHQLTISAPVLREL...........................................
  261-  399 (258.81/174.53)	AVEILFLRLLTIGHTFG...PC..VFHLLRMSTGIRELKLQLEDH....IADgEV...PCSD...G.CFCYK......PRVWENKNIRLNFLQNVEINNLSGAECQIYFVKRLLRWTPVLKTITL..GFD...PSVTVSEEVSNELLSFSTPGICMEIYLHRDGAR
  675-  788 (113.60/60.90)	............GGRLGirlPPsgVFAKLTV.LGLRDIR..FDSQ....LDV.GV...VISS...GrCPSLQelrldnSQVMSNLAIGSASLRLVHLSKLEG.......MKQLMIFAPVLTELAVscCFDmriPIADISAPALETLC...................
  867- 1004 (266.97/155.91)	NIEILSLILTTRGHTFG...PC..AFHFLKMSTSIRGLQLIFDDN....LED.KV...LCSS...G.CICYK......PQDWETMDIFLSFLENVEINRMTGAECDICFVKRLLRWTPVLKTITL..IFH...PSVTISEEVCEGLCSLSSAGVCMEIYLHRNGVK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     122.00|      22|      22|    1059|    1080|       3
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 1030- 1043 (32.09/ 9.44)	GGRR..CW.......S...A.G.GG.GGR
 1047- 1066 (30.01/ 8.44)	GRRP..RRSAVE...R..rATS.GG.GGR
 1067- 1087 (31.76/ 9.29)	GRRR..RWAASGGGAS......gGGvGPN
 1088- 1114 (28.14/ 7.54)	GVRGgwRWREGRSGAAsleGEA.GG.GGK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.76|      26|      26|     612|     637|       4
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  585-  599 (20.13/ 7.56)	.....PD....VTDLA..RVTAAL...HL
  612-  637 (48.49/29.02)	CSDPAPDKIAAVLDLAAPRLEGEL...CF
  639-  664 (34.15/18.17)	INTPPPATVAAS...GAAGIGGAIqipCF
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     163.70|      46|     531|       2|      50|       5
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    2-   50 (85.36/63.95)	ADGGGGGYdllTALPDDV.....LRLPSTAEAARTSVLSRRWRSLWTN.LPELRF
  533-  584 (78.34/50.85)	ASSSSSGF...SALPDEVlclilLRLPSAAAAARTSLISRRWRNLWAIlLPNLRF
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.64|      20|      20|      75|      94|       6
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   57-   71 (21.01/ 7.74)	.....ASPPRIRSSPSSTWP
   75-   94 (34.68/18.35)	SRASSASTSSRRRRRRRGRP
   96-  110 (20.95/ 7.70)	SEARFRSHASRRPRR.....
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.74|      25|      34|     431|     456|       7
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  431-  456 (38.76/37.62)	QNTPSMDAmVDEMSKAYQE..LVAAAKA
  467-  493 (39.98/32.14)	ENTVTMDA.AHEAFEQLRElfLVACDHA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03758 with Med32 domain of Kingdom Viridiplantae
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