<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03757

Description Uncharacterized protein
SequenceMADGGGGGYDLLTALPDDVLRLPSTAEAARTSVLSRRWRSLWTNLPELRFADVTDLASPPRIRSSPSSTWPRSSSRASSASTSSRRRRRRRGRPGSEARFRSHASRRPRRSPSAYAAASASSCHHPAFDSQYQRDLGDAVSSEVCASLRELCICYADVVSNLAIRSESLRLVQLHRLEGLHQLTISAPVLRELDLFARFVRRIPIAHISAPALETLHWVDLFSSSSVRFDETPNVHRLSAYGIVPRVSYKLLVKAVNKLPAVEILFLRLLTIGHTFGPCVFHLLRMSTGIRELKLQLEDHIADGEVPCSDGCFCYKPRVWENKNIRLNFLQNVEINNLSGAECQIYFVKRLLRWTPVLKTITLGFDPSVTVSEEVSNELLSFSTPGICMEIYLHRDGARSGRIIAVFIATDGICSPVFCLLLPFSTMFTHQNTPSMDAMVDEMSKAYQELVAAAKAIQEARWQPGGENTVTMDAAHEAFEQLRELFLVACDHADVLVQSVLHSVVSDPECFVDGARAITPDEDSVRSPTRYSASSSSSGFSALPDEVLCLILLRLPSAAAAARTSLISRRWRNLWAILLPNLRFPDVTDLARVTAALHLHHASPFLLLHISCSDPAPDKIAAVLDLAAPRLEGELCFDINTPPPATVAASGAAGIGGAIQIPCFEKATEITIRFGGRLGIRLPPSGVFAKLTVLGLRDIRFDSQLDVGVVISSGRCPSLQELRLDNSQLAVSCCFDMRIPIADISAPALETLCWVDLFSWRSVRFSAMPNVHRLAAYGVVYGDDFVQDAQSLPLLQHFKAARNVRLSLVYPYSLVNYEYLIDGISISMLPDNIEILSLILTTRGHTFGPCAFHFLKMSTSIRGLQLIFDDNLEDKVLCSSGCICYKPQDWETMDIFLSFLENVEINRMTGAECDICFVKRLLRWTPVLKTITLIFHPSVTISEEVCEGLCSLSSAGVCMEIYLHRNGVKTNQTHIVPGSIIPQALKHFKERPAVGGRRCWSAGGGGGRREAGRRPRRSAVERRATSGGGGRGRRRRWAASGGGASGGGVGPNGVRGGWRWREGRSGAASLEGEAGGGGKGGAGRRRWRERPAASVEAGGGARGCDGSVWL
Length1110
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.037
Instability index62.45
Isoelectric point8.83
Molecular weight121605.03
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03757
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      92.43|      17|      28|     194|     210|       1
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  194-  210 (33.34/23.49)	DLFA....RFVRRIPIAH.ISA
  220-  240 (21.98/12.63)	DLFSsssvRF.DETPNVHrLSA
  735-  746 (16.14/ 7.05)	.........FDMRIPIAD.ISA
  756-  776 (20.97/11.67)	DLFSwrsvRF.SAMPNVHrLAA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     659.22|     159|     568|     241|     399|       2
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  143-  304 (157.93/130.80)	EV.CASlreLCICY.ADVVSNLAIRSESLRLVQLHRLEG.......LHQLTISAP..........................VLR...........................................eldlfarfvrripiahisapaletlhwvdlfssssvrfdetpnvhrlsaYGIVPRVSYKLLVK.....AVNKLP...........................................................................................................................................................................................................................................................AVEILFLRLLTIGHTFGPCVFHLLRMSTGI.........................RELKLQLEDHIADG
  305-  495 (247.32/210.88)	EVPCSD...GCFCYKPRVWENKNIRLNFLQNVEINNLSGAECQIYFVKRLLRWTP..........................VLKTITLGFDPSVTVSEEVSNELLS...FSTPGICMEIYLHRDGAR......................................sgriiavfiatDGICSPV.FCLLLPfstmfTHQNTP...........................................................................................................................................................................................................................................................SMDAM...VDEMSKAYQ....ELVAAAKAIqearwqpggentvtmdaaheafeqlRELFLVACDH.ADV
  496-  580 (37.29/22.72)	LV...........................QSVLHSVVSDPEC...FVDGARAITPdedsvrsptrysasssssgfsalpdeVLCLILLRL.PSAAAAARTS..LISrrwRNLWAILLP...................................................................................................................................................................................................................................................................................................................................................................................................................
  832-  874 (22.76/ 9.71)	.........................................................................................................................................................................................................nlrfpdvtdlarvtaalhlhhaspflllhiscsdpapdkiaavldlaaprlegelcfdintpppatvaasgaagiggaiqipcfekateitirfggrlgirlppsgvfakltvlglrdirfdsqldvgvvissgrcpslqelrldnsqlavsccfdmripiadisapaletlcwvdlfswrsvrfsampnvhrlaaygvvygddfvqdaqslpllqhfkaarnvrlslvypyslvnyeylidgisismlpdNIEILSLILTTRGHTFGPCAFHFLKMSTSI.........................RGLQLIFDDNLED.
  875-  994 (193.92/163.04)	KVLCSS...GCICYKPQDWETMDIFLSFLENVEINRMTGAECDICFVKRLLRWTP..........................VLKTITLIFHPSVTISEEVCEGLCS...LSSAGVCMEIYLHRNGVK..............................................tnqTHIVPGSIIPQALK.....HFKERP...........................................................................................................................................................................................................................................................AV...................................................................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     122.00|      22|      22|    1024|    1045|       3
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  995- 1008 (32.09/12.48)	GGRR..CW.......S...A.G.GG.GGR
 1012- 1031 (30.01/11.19)	GRRP..RRSAVE...R..rATS.GG.GGR
 1032- 1052 (31.76/12.28)	GRRR..RWAASGGGAS......gGGvGPN
 1053- 1079 (28.14/10.02)	GVRGgwRWREGRSGAAsleGEA.GG.GGK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.16|      21|      22|     687|     707|       5
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  664-  680 (22.59/10.97)	.FEKATEIT...IRFG.GRLGI
  687-  707 (34.94/21.06)	VFAKLTVLGLRDIRFD.SQLDV
  710-  731 (28.63/15.91)	VISSGRCPSLQELRLDnSQLAV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.73|      16|      20|      75|      94|       7
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   71-   89 (24.59/16.95)	PrssSRASSASTSSRRRRR
   94-  110 (27.15/ 8.70)	P..gSEARFRSHASRRPRR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.50|      23|      26|     597|     622|       8
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  597-  622 (34.27/25.47)	LHLhhASPFLLLHIsCSD...PAPDKIAA
  624-  649 (38.24/17.91)	LDL..AAPRLEGEL.CFDintPPPATVAA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.43|      16|      32|     780|     795|      10
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  780-  795 (28.60/15.34)	VYGDDFVQ.....DAQSLPLL
  809-  829 (22.82/11.01)	VYPYSLVNyeyliDGISISML
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03757 with Med32 domain of Kingdom Viridiplantae
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