<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03753

Description Uncharacterized protein
SequenceMASSSSSSSFASSSGGGDSASAAAAAAAAEGAIVVAVAVRGDGRASRRAARWAAANLAPGAGAGRVALVHVIPPVSFVPSPSGERVPVEKMEAETVEMYAEDRRARAQEEVFLPLRRLFARKTVETVILEAESVTAALVRYAADSGVRNLVVGSTSLNWFKRILRLRDVPSTVLKAMPCSCNVFVVSRHRLTIKFANQARTGKSSACVRTQSISHKSFSRIQKNWLLDKQSLHDHPEDGTPKSSGDTSSDAGSHTCSSRSTSINAGKSSGSYGRSLFGSLGRKTPGKDVNRDSDAIGRLKEIPYVALSSIDEDLHSQPVDEVAKLRKELQDTLVMYDKACEDLVHAKKKIKVLSSECTEEAKKVQDALQREELLKQKVADEKTRHLEAVTEVEMAKTLFAQEAFSKHKAEIVADMVTADKTKVMDALLSTGKSCRRYSKREIQLATDNFSDAKKIGEGGYGNVYRCTLDHTEVAVKVIQQDSSDKIDEFLREVEILSQLHHPNLLLLLGFCPEIGCLVYEYMENGSLEDQLINNKGQQSLHWFLRIQIIFEVACGLAFLHATKPEPIVHRDLKPGNILLDKNYVSKIGDVGLAKLISDIVPEGLTEYRDTAVAGTLYYMDPEYQLTGTIRPKSDVYALGIIILQLLTGKRPHGLILSAEEAIRKGSISDVLDSSQIDWPIAEAEILAKLAVRCTALKCRDRPSLESEVLPEIESILSRVTASPTLRSPNAAVPSHFICPILQEVMDDPYVAADGHTYEHRAIKAWLKKHKTSPVTKQRLQYLSIIPNHSLRVAIQQWKSQSS
Length802
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.242
Instability index52.31
Isoelectric point8.35
Molecular weight87930.35
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03753
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.97|      30|      37|     359|     388|       1
---------------------------------------------------------------------------
  359-  388 (47.41/36.30)	EEAKKV..QDAL..QREELLKQKVADEKTRHLEA
  393-  426 (39.56/29.02)	EMAKTLfaQEAFskHKAEIVADMVTADKTKVMDA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.48|      20|      24|     231|     253|       2
---------------------------------------------------------------------------
  231-  250 (36.83/22.68)	SLHDHPEDGTPKSSGDTSSD
  275-  294 (32.66/23.40)	SLFGSLGRKTPGKDVNRDSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.56|      16|      25|     109|     133|       3
---------------------------------------------------------------------------
   87-  102 (28.53/20.52)	PVEKMEA....ETVEMYAED
  114-  133 (21.04/17.42)	PLRRLFArktvETVILEAES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.87|      18|      28|      15|      32|       4
---------------------------------------------------------------------------
   15-   32 (31.64/21.68)	GGGD.SASAA..AAAAAAEGA
   41-   61 (24.22/14.72)	GDGRaSRRAArwAAANLAPGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.55|      18|     188|     481|     499|       5
---------------------------------------------------------------------------
  481-  499 (26.67/21.36)	DSSdKIDEFLREVEILSQL
  672-  689 (32.87/21.18)	DSS.QIDWPIAEAEILAKL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03753 with Med32 domain of Kingdom Viridiplantae
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