<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03748

Description Uncharacterized protein
SequenceMEIEEAAGAGEDELEMEAPSVSTVAIAVNGSKNSRHALKWALDKFVPEGRVLFRILHVRPTIKMVPTPMGNFIPITQVREDVATAYRKEVEWQANNMLLPYRKMCAQRKVEAEAVLLESDDVPTAISEEISKFSVCKLVLGSSSSIFRRKLKGSKTATKICECIPSFCTAYVVSKGKLSSVHSATSDAIGTPESISSSTVSSPSSRSFSSSVPSEWGDTYGSANVSFHQPSLSSQRDQALANMNKLSNRTASPSGSGGSEISNHDDTVLTSSHSINSEARFSSSSSGNSIYKSFNRDHSFDNSDQASVSDIATNLKHSHDQEYLKLEIERLRVKLRHLQKLNELAQKESLDANQKLHKLGIQDIEDEIKFKEIELTEEKVRRLIRKKEREEQEVARREDQLRNENAEREATKQSNGNQEGDENKTGERIFMRCFDEYNRYTWEEIKASTSSLSEDLMIGRGSYGTVYKAKFHHTVAAVKVLNSPEGCGTQQLQQELEVLGKIRHPHLLLMLGACPEHGCLVYEYMENGSLDDMLQRRNNTPPLTWFDRFRIAWEVATALMFLHSSKPEPIIHRDLKPANILLDRNLVSKIGDVGLSTLLPSMDQYLSTMIKNTAPVGTFCYIDPEYQRSGAVSMKSDVYALGIVILQLLTAKSPMGIAHVVETALEDGHFVDILDAAAGQWPLNEAQELAVLALKCAEMRRRDRPDLSDHVLPALERLKDVATKAREMALNGHQTAPPSHFICPILQEVMADPYVASDGYTYDRKAIELWLSMNDKSPMTNLRLPHKSLIPNHSLRSAIMDWRSKT
Length806
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.447
Instability index45.62
Isoelectric point6.18
Molecular weight90096.06
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03748
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.29|      18|      18|     273|     290|       1
---------------------------------------------------------------------------
  254-  282 (22.97/12.43)	SGSGGSEIsnhddtvltssHSINSEARFS
  283-  301 (28.32/17.03)	SSSSGNSI..........yKSFNRDHSFD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.44|      17|      18|     391|     408|       2
---------------------------------------------------------------------------
  391-  408 (23.37/26.73)	EQEVARREDQlRNENAER
  412-  428 (29.07/26.46)	KQSNGNQEGD.ENKTGER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     226.83|      67|     121|     612|     681|       3
---------------------------------------------------------------------------
  612-  681 (111.37/73.77)	NTAPVGTF.CYIDPEYQRSGAVSMKSDVYALGIVILQL.LTAKSPMGIAHVVETALEDGHfvdILDAAAGQW
  734-  802 (115.46/69.18)	QTAPPSHFiCPILQEVMADPYVASDGYTYDRKAIELWLsMNDKSPMTNLRLPHKSLIPNH...SLRSAIMDW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.71|      11|      39|      80|      90|       4
---------------------------------------------------------------------------
   80-   90 (18.62/10.61)	EDVATAYRKEV
  120-  130 (19.10/11.04)	DDVPTAISEEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.31|      29|      34|     162|     194|       6
---------------------------------------------------------------------------
  162-  194 (45.67/32.51)	ECIPSFCTayvvSKGKLSSVHSATSDAIGTPE.S
  197-  226 (45.65/24.01)	SSTVSSPS....SRSFSSSVPSEWGDTYGSANvS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03748 with Med32 domain of Kingdom Viridiplantae
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