<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03746

Description Uncharacterized protein
SequenceMADRLDRWRELFHGAAGSAGICDVIENAILVAVADAPQELLRRRDRICEILFTAPRGAPSSCHHGCGSAATPTPATPVEEDKGSVRRVPEKQSKVDSSSNGALGGGRRDDVDDDSDSDSDDERLRRAAASNYGHNYDDDDEEEEDEQEAAPAEEEEEQELDPEAVELEALTNEIDEESQVVGEVLRIKDLFLHKEDHSDATLFESLRRLQLMQLSVSTLKATEIGRAVNGLRKHNSQQIRHLVRTLIEGWKILVDEWVSTTNVALTDNSPGSSKTSVIDDADDEGLPSPPLDEGAFFATQTTAIQLSEFFDEMDEDGNLRHNNDGSLGNKRENNGRRPTSHPALTKQEPPRNMGAVEKLQSRRPELTRQELSMRQANPQNPQNSSLQVKHQAMLNKQSKPLSSDSGPGRPLRAAPQQKPFTETKSRLAREQVAVERKPAASHVDKSRLPAQPSSGVRLESAKPKIYDGLESNSRLEAAKRRLQERYQEAENAKRQRTIQVMELGDIPKPKHQNRQPMMKSRNHIRSWANGRR
Length532
PositionUnknown
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.03
Grand average of hydropathy-0.969
Instability index70.32
Isoelectric point5.40
Molecular weight59350.83
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03746
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.93|      16|      19|     330|     348|       1
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  333-  348 (30.02/20.42)	NNG...RRPTSHPALTKQE
  352-  370 (23.90/ 7.59)	NMGaveKLQSRRPELTRQE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.87|      16|      18|     457|     474|       2
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  459-  474 (27.61/23.29)	ESAKPKI...YDGLESNSR
  476-  494 (21.26/ 8.79)	EAAKRRLqerYQEAENAKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.65|      18|      18|     140|     157|       3
---------------------------------------------------------------------------
  116-  137 (18.14/ 6.73)	DSDSDDErlRRAAASnyGHNYD
  140-  157 (28.73/14.66)	DEEEEDE..QEAAPA..EEEEE
  160-  177 (25.79/12.46)	LDPEAVE..LEALTN..EIDEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.30|      17|      18|     409|     426|       4
---------------------------------------------------------------------------
  409-  426 (26.03/22.42)	RPlRAAPQQKPFTE..TKSR
  429-  447 (23.27/14.13)	RE.QVAVERKPAAShvDKSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.41|      16|      20|      72|      87|       6
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   72-   87 (28.29/17.77)	PTPATPVEEDK....GSVRR
   89-  108 (22.12/12.23)	PEKQSKVDSSSngalGGGRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.10|      13|      23|      21|      37|       7
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   21-   37 (17.16/21.82)	ICDVienaILVAVADAP
   47-   59 (24.94/17.37)	ICEI....LFTAPRGAP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03746 with Med26 domain of Kingdom Viridiplantae
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