<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03745

Description Uncharacterized protein
SequenceMAAATATAAVAELERRVMAAVKASAARGDPPLLQAAEAARCAREASSSSISVDGGAGAGGALASALVSNLCFAHNTGAMWKVLDQAMASRLVSPLLTLALLTPRVVPNRRAQPEAYRLYLELLGQYTVAPVCTERVETKAMLVKSIDDALHLSDSYGFQRMDFGHTVILFVLSVIKILTDCILEDCGLPTIDGDGRDISYAIGAEKSMNIDGKGSSFDRKDEHRECLRRKNTIMTLEVVEKITANKNTQVFLRLVYRNTPENFNILLQRLQLIGALKSKNFVTANNLLDSLMMNIRKVVTTGHQLHKGNLLGSIVSTKPCSSAARSVFGAGKSSCWIPFDMFMENTMDGRHLDTISSIEALTELAKTLQVLNRATWQETFQALWISALRLIQRDRGIPEGPFPHLHSRLCMLLAIVPLSIASILKEESDKIEGGMVSVRRGELLSSLQVLGQFFGLLSPPAAVVQSANIAARKALVALSILKDRNEKAGNMLHLIVEACIARNLVDTSVYFWPSYVVPVKDTSAVEESPWLALMEGSPLMGLKDALMVTPASSLAELEKLQPFAVSGSDEEKLAASKILCGASLLRGWNIQEHVIQMVLKLLSTLLPLDSGSDGFYIHHMPMLHALISGISSIDVVHILSMYGLVPELAAILMPLCEIFGSLPSSDHRNCSFEEASVYSVFSCAFLCLLRLWKFHRPPVEYALSKHGVFVSSELSLDFLLLLRNSHFALNSPYDVSRKSIFQLDPSFEKPVYIDSFPKLRAWYFQNQACIASTLSSSYKRKSILQVANKILKIVCHKMSKSAILPVSSQSTLSSSMSGSPLGTQDDVSQGPPATAWEVLEAVPFVLETVLAACAHGRLSSRDLITGLRNLADFLPASVAVIVSYFSAEITRGLWKPVMLNGTDWPSPAATLSAVESDIEEALATAGVHINISPRTRPPIPMLPLPIATLISLSITVKMEEYNHLQGIVDKGVEICATSSSWPSMAIIGALWAQKVRRWHDYIIQSCSETPFTRDKNAVAQLIRSCFSSFLGPLVDGRSCFVADRGVNRLLGQAQEERSPRFSISPGLLYTRCCRMFPDNYFVCEEILKVIIERARALANECDSSRPHLLKSGRMTLSSATCSVEQIASLAASMLCHAGGMKLVRLLYEQILPTMLLSAGEARLGSAGPVCSSFEGFALAYVLLVSGASTWGVGETSPVYTSLYTSKRQRVVDRHLEFVANVMQGNIELGCGQVTWRTYVICFVGLLVDFAPTWIPEVKLETLKKLASGLWKWHECDLALSLLERGGPKAISTVVEYIL
Length1298
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy0.195
Instability index49.10
Isoelectric point7.83
Molecular weight141864.29
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03745
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     312.84|     116|     200|     668|     790|       1
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  668-  741 (78.92/73.19)	................................................................RN.CSFEEASVYSVFSCAFLCLLR.LWKfhrpPVEYA....LSKHGVFVSSELSLDFLLLLRNSHFALnSPYdvSRKSIF
  742-  790 (53.85/29.79)	QLD.P.....SFEKPVYIDSFPKLRAWYFQNQ....ACIASTLSSSYKRKSILQV..ANKI...................................................................................
  824-  940 (150.54/105.69)	QDD.V.....SQGPPA..TAWEVLEAVPFVLEtvlaACAHGRLSS...RDLI.........tglRNlADFLPASVAVIVSYFSAEITRgLWK....PVMLNgtdwPSPAATLSAVESDIEEALATAGVHINI.SPR..TRPPIP
  941-  995 (29.54/11.26)	MLPlPiatliSLSITVKMEEYNHLQG.IVDKG....VEICAT.SSSWPSMAIIGAlwAQKV...................................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.67|      25|     210|     388|     459|       2
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  252-  276 (43.86/ 6.82)	LRLVYRN..TPEN.FNILLQRLQLIGAL
  388-  415 (37.80/98.45)	LRLIQRDrgIPEGpFPHLHSRLCMLLAI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.12|      18|      18|     610|     627|       4
---------------------------------------------------------------------------
  587-  613 (21.24/ 9.89)	GWNIqeHVIQMvlkllstLLPLDSGSD
  614-  631 (34.88/20.86)	GFYI..HHMPM.......LHALISGIS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.15|      22|     279|     514|     541|      10
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  514-  541 (29.84/38.84)	SYVVPVKDTSAVEESpwlalMEGSPLmG
  801-  822 (39.31/26.16)	SAILPVSSQSTLSSS.....MSGSPL.G
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.85|      14|      19|      57|      70|      12
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   57-   70 (24.62/15.28)	GA.....GGALASALVSNL
   77-   95 (20.23/11.09)	GAmwkvlDQAMASRLVSPL
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.64|      22|     145|    1129|    1151|      13
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 1129- 1151 (33.77/25.33)	LAASMLcHAGGMKLVRLLYEQIL
 1277- 1298 (36.88/21.80)	LALSLL.ERGGPKAISTVVEYIL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.90|      29|      62|    1159|    1190|      14
---------------------------------------------------------------------------
 1159- 1190 (43.18/35.04)	GEARLGsAGPVcsSFEGFALAYV.LLVSGASTW
 1224- 1253 (53.72/31.37)	GNIELG.CGQV..TWRTYVICFVgLLVDFAPTW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03745 with Med33 domain of Kingdom Viridiplantae
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