<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03744

Description Uncharacterized protein
SequenceMAAATATAAVAELERRVMAAVKASAARGDPPLLQAAEAARCAREASSSSISVDGGAGAGGALASALVSNLCFAHNTGAMWKVLDQAMASRLVSPLLTLALLTPRVVPNRRAQPEAYRLYLELLGQYTVAPVCTERVETKAMLVKSIDDALHLSDSYGFQRMDFGHTVILFVLSVIKILTDCILEDCGLPTIDGDGRDISYAIGAEKSMNIDGKGSSFDRKDEHRECLRRKNTIMTLEVVEKITANKNTQVFLRLVYRNTPENFNILLQRLQLIGALKSKNFVTANNLLDSLMMNIRKVVTTGHQLHKGNLLGSIVSTKPCSSAARSVFGAGKSSCWIPFDMFMENTMDGRHLDTISSIEALTELAKTLQVLNRATWQETFQALWISALRLIQRDRGIPEGPFPHLHSRLCMLLAIVPLSIASILKEESDKIEGGMVSVRRGELLSSLQVLGQFFGLLSPPAAVVQSANIAARKALVALSILKDRNEKGHNSSKDSSSIKAAGNMLHLIVEACIARNLVDTSVYFWPSYVVPVKDTSAVEESPWLALMEGSPLMGLKDALMVTPASSLAELEKLQPFAVSGSDEEKLAASKILCGASLLRGWNIQEHVIQMVLKLLSTLLPLDSGSDGFYIHHMPMLHALISGISSIDVVHILSMYGLVPELAAILMPLCEIFGSLPSSDHRNCSFEEASVYSVFSCAFLCLLRLWKFHRPPVEYALSKHGVFVSSELSLDFLLLLRNSHFALNSPYDVSRKSIFQLDPSFEKPVYIDSFPKLRAWYFQNQACIASTLSSSYKRKSILQVANKILKIVCHKMSKSAILPVSSQSTLSSSMSGSPLGTQDDVSQGPPATAWEVLEAVPFVLETVLAACAHGRLSSRDLITGLRNLADFLPASVAVIVSYFSAEITRGLWKPVMLNGTDWPSPAATLSAVESDIEEALATAGVHINISPRTRPPIPMLPLPIATLISLSITVKMEEYNHLQGIVDKGVEICATSSSWPSMAIIGALWAQKVRRWHDYIIQSCSETPFTRDKNAVAQLIRSCFSSFLGPLVDGRSCFVADRGVNRLLGQAQEERSPRFSISPGLLYTRCCRMFPDNYFVCEEILKVIIERARALANECDSSRPHLLKSGRMTLSSATCSVEQIASLAASMLCHAGGMKLVRLLYEQILPTMLLSAGEARLGSAGPVCSSFEGFALAYVLLVSGASTWGVGETSPVYTSLYTSKRQRVVDRHLEFVANVMQGNIELGCGQVTWRTYVICFVGLLVDFAPTWIPEVKLETLKKLASGLWKWHECDLALSLLERGGPKAISTVVEYIL
Length1311
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy0.181
Instability index49.35
Isoelectric point7.96
Molecular weight143163.64
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03744
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     373.15|     119|     374|     807|     937|       1
---------------------------------------------------------------------------
  527-  648 (133.85/85.92)	SYVVPVKDTSAVEESpwlalMEGSPLmGLKDALMVTPASSLAE.LEKLqPFAVsgsdEEKLAASK..ILCGASLLRGW.NIQEHV...IQMVLKLLSTLL......P.LDSGSDgfyihhMPMLHALISGISSiDV......
  814-  937 (186.00/161.31)	SAILPVSSQSTLSSS.....MSGSPL.GTQDDVSQGPPATAWEvLEAV.PFVL....ETVLAACAhgRLSSRDLITGLrNLADFLPASVAVIVSYFSAEITRGLWKPvMLNGTD......WPSPAATLSAVES.DIEEALAT
 1257- 1305 (53.30/27.77)	............................................................................GL..LVDFAPTWIPEVKLETLKKLASGLWK..............WHECDLALSLLER.GGPKAIST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.51|      17|      18|     252|     268|       3
---------------------------------------------------------------------------
  252-  268 (30.23/20.09)	LRLVYRNTPENF...NILLQ
  270-  289 (23.28/13.83)	LQLIGALKSKNFvtaNNLLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     130.35|      28|      30|     680|     707|       5
---------------------------------------------------------------------------
  680-  707 (52.14/32.62)	HR...NCSFEEASVY..SVFSCAFLCLLRLWKF
  708-  740 (36.21/20.35)	HRppvEYALSKHGVFvsSELSLDFLLLLRNSHF
  749-  777 (42.01/24.82)	SR...KSIFQLDPSFekPVYIDSF.PKLRAWYF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     158.25|      50|     715|     390|     467|       8
---------------------------------------------------------------------------
  390-  439 (86.46/68.23)	LIQRDRGIP...EGPFPHLHSRLCMLLAIVPLSIASILKEESDKI..EGGMVSVR
 1103- 1157 (71.79/27.41)	IIERARALAnecDSSRPHLLKSGRMTLSSATCSVEQIASLAASMLchAGGMKLVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.85|      14|      19|      57|      70|       9
---------------------------------------------------------------------------
   57-   70 (24.62/15.06)	GA.....GGALASALVSNL
   77-   95 (20.23/10.96)	GAmwkvlDQAMASRLVSPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.28|      12|      20|      96|     107|      10
---------------------------------------------------------------------------
   96-  107 (20.61/11.14)	LTLALLTP.RVVP
  118-  130 (16.67/ 7.63)	LYLELLGQyTVAP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03744 with Med33 domain of Kingdom Viridiplantae
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