<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03739

Description Uncharacterized protein
SequenceMALSCRGNFSLIASIVTVIAGVWFDLHCSALAAYYRMKEEDITTMLFGKKVIELTEDTFDSSKEERKIFEELFCRTGTGGSSTRHPHRDGKNSSLKDASKELISTNTPSSSASNHRSAHCRVVESFTYGNLSSYLVFCNNDKQKLHKTVGFPDMASASDLVIQWTPPSVERVYTRRAVARRNQRAKLCSVLDLERVDITSVRQRRDRGHAVLWDHLRLHANLLMMDAGWKIDGKERWDKSKVDHVYESPDKVMRLFSLPRAWKCFGQWLLINSSGFGGNDYGRIWFNIHDFLSDLKNTLLCLEYEVRLPKQSLSFLNQWQLLDPFMAVVCIDKKVRALKKGVALKAVNSTVTFVSCIESKLSNARNADNPLGLNHSNNYNSTHPRSRKNLLPLLQSDDPDGNSSHNKHPSTVGKRKSSQYKMDQRLPSIAEIQERGIRSTAHRIVMGLQDSTALPGSRTTCLNMKNKLSYSKSNLTEHIQDKSDPLYFPPNYSPDDLVENVQINDPSFHAYNMIESTNVDNSADSPSDELLLGANLLFSHEVDDMLLDDISNEHYCTATVSEPQAKNIDIEDGPSGSSSLVSEKDIGLKTNKDDINNEQHNAVVVPESQSANKDVTDGPAGALSFLPKMDTVLEANEMSSEEMTKAGQLSCEGTNNAMVISEPQLLFVSPHDGTLSFMNGSICSREMRSCLNASNDTVGTNMEPDIQSSVYEASLIRGFLYLDNEGSPICWTVINPEPPRQLICSEPISKASELHGEMTKLGSSKTNRKRSKKAANIENKARQKKQKINDVPVSDCAVGQYMDHTIESPAGCLMINDKEQIGSASTGQITLNLLPGNSNDKNQGTEQQVPIKNSDNDQARVSIGSTEKIVSEKNPKKDVKRQKASSRHKCKFDDNDLLMTAVIHKLTGRYRNRFSRRLAKKSGFKRLPRCRWGSEERCDRKTFPKGARTVLGKLLEMGIVCKVNILQYRRPGSKNVLKDGNITKKGIKCRCCDTVFTMSSFKWHAGLRQEIPSLNLFLGSGKSYTLCQLQAWSIEHKARKERAKCTMPLQADQNDDTCGLCGDGGELICCDNCPASYHQDCLPCQIYMNLRSRVGIPNHTVDGFSCSVLRNNGDQRVSTAADIAILAECNMKLVIALSIMEECFLPIIDARTGIDIIPPILYNWRSDFVHLDYKGFYTVVLENDDSIISVASIRLHGTIVAEMPLIATCLEKRQQGMCRRLMDYIEQMLKSLKVEMLLLSAIPSLVDTWTTAFGFVPIDDLDRKNLSKLRLVSVPGTVLLKRNPYECPETNAEITVLVHASFLIQLARSAACRIQGLERLQAPSIEKAWCSLRNTQVARKNYLRPGLSGKVKDCDRDHAHTYGTSSSYNVNKMDSVSRNRNPTQESMHQQTESGTMEKNSSHLPAVTKSCTRTYLNNHVVQADTITTTNQSLARTGPELFKTAPFADMCDDAKLDAMDEDELLASIDVDRIVMEHYQATNTPRGSSKSPLGKCNFNGFDENNLPQELSVMCDHGSKLAFCPEAKSHLLEMKDNLLAISHELIDGQLSPQQSNELHQKRALLKKQIELLGEYTARLTQDEERQKSHSMASTTAHQGHHPTSIRSSSFVKDTNIFQSPIYTRNAPGESGLCFSSAPYSYMDGLSMPLPSVQRDYTPRAIDISYTEGSGDKQWSSTHFSWTKELEANISAAYLSASMEWSEQQEILRELMSPTCTYKLLYVTPEKIAKSDALLRQLENLYSRGHLSRIVIDEAHCVSQWGHDFRPDYQFFIHQHLGILKQKFPQTPVLALTATATASVKEDVVQVLGLANCIIFRQSFNRPNLRVVTNWLPVFLVGNSGPVPILTCSREYGHKASHYHGSMDPEDRANIQKQWSKDKINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQLSSCVLFYNYSDYVSYCENDVDCRRLLQLIHFGEMFNPSCCAKTCDNCLKEFRWVEKDVTNIARQLVDLVMMTKQTFSTTHILEVYRGSVNQNVKKHRHDTLSLHGAGKHLAKGEAARILRHLVTEEILIEDVKKSENYGSVSSVLKSLAAELYEALRCLRTQIMDENPQLLAYHIFKNETLREISTRMPRTKEELVEINGMSKNKLNKYGDRVLATIEGFLTKYPNATKKTSSGGGSNEHSEAVKKRRGFTATNTSTNCDDFEERTVQSKKRAAKTRTRQEISDAASIVQDVRYIDLELDGCEQVNEVTYSVQKPVASGRVLPAWQSARIA
Length2252
PositionUnknown
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.472
Instability index46.85
Isoelectric point8.17
Molecular weight252560.01
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
metal ion binding	GO:0046872	IEA:UniProtKB-KW
N-acetyltransferase activity	GO:0008080	IEA:InterPro
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03739
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.65|      21|     128|    1737|    1772|       1
---------------------------------------------------------------------------
  264-  292 (29.31/ 6.41)	CFGQWllinSSGFgGNDYGriwFNIHDFL
 1752- 1772 (46.33/45.39)	CVSQW....GHDF.RPDYQ...FFIHQHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.60|      40|     131|     480|     579|       3
---------------------------------------------------------------------------
  538-  579 (69.60/123.32)	FSHEvdDMLL....DDISNEHYCTATVSEPQAKNIDIEDGPSGSSS
  581-  624 (65.00/18.10)	VSEK..DIGLktnkDDINNEQHNAVVVPESQSANKDVTDGPAGALS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     149.95|      33|     131|     672|     704|       4
---------------------------------------------------------------------------
  672-  704 (58.54/32.75)	DGTL..SFM....NGS.ICSREMRSCLNA..................SNDTVGTNMEP
  712-  747 (29.31/12.62)	EASLirGFLyldnEGSpIC....WTVINP..................EPPRQLICSEP
  755-  803 (27.66/11.48)	HGEM..TKL....GSS.KTNRK.RSKKAAnienkarqkkqkindvpvSDCAVGQYMD.
  805-  835 (34.44/16.15)	..TI..ESP....AGC.LMINDKEQIGSA..................STGQITLNLLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     172.49|      55|     557|    1062|    1146|       6
---------------------------------------------------------------------------
 1043- 1112 (79.63/83.12)	AKCTMPL.QADQNDDTCGLcgdggelIccDncpASYHQDCLPcQIYMNLRSrvGIPNHTVDGFSCSVLRNN
 1127- 1184 (92.87/83.63)	AECNMKLvIALSIMEECFL.....piI..D...ARTGIDIIP.PILYNWRS..DFVHLDYKGFYTVVLEND
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     269.04|      87|     321|      57|     161|       7
---------------------------------------------------------------------------
   57-  148 (141.81/95.26)	DTFDSSK.EERKIFEELFCRTGTGGSST..RHPHRDGKNSSlkdaSKELISTNTPSSSASNHR....SAHcRVVESFT.YGNLSSYLVFCNNDKQKL..HKT
  377-  473 (127.23/71.65)	NNYNSTHpRSRKNLLPLLQSDDPDGNSShnKHPSTVGKRKS....SQYKMDQRLPSIAEIQERgirsTAH.RIVMGLQdSTALPGSRTTCLNMKNKLsySKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.36|      21|    1227|     651|     671|       8
---------------------------------------------------------------------------
  651-  671 (38.77/28.82)	CEGTNNAMVISEPQLLFVSPH
 1879- 1899 (39.59/29.60)	CATVAFGMGINKPDVRFVIHH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.60|      18|     324|     151|     168|      10
---------------------------------------------------------------------------
  151-  168 (36.77/23.28)	FPDMASASDLV..IQWTPPS
  488-  507 (30.83/18.26)	FPPNYSPDDLVenVQINDPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.07|      42|     197|    1640|    1685|      14
---------------------------------------------------------------------------
 1640- 1685 (69.74/55.70)	GLSMPLP..SVQRDYTPRAidiSYTEGSGD.KQWSSTHFSWTKElEANI
 1833- 1877 (71.34/44.75)	GNSGPVPilTCSREYGHKA...SHYHGSMDpEDRANIQKQWSKD.KINI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     280.39|      88|     559|    1343|    1435|      15
---------------------------------------------------------------------------
 1343- 1435 (140.37/129.97)	LRPGLSGKVKDCDRdhAHTYGTSSS....YNVNkmDSVSRNRNPTQ.ESMHQQTESGTMEkNSSHLPAVTKSCTRTY......LNNHVVQ.ADTITTTNQSLART
 1901- 2000 (140.02/109.29)	LPKSIEGYHQECGR..AGRDGQLSScvlfYNYS..DYVSYCENDVDcRRLLQLIHFGEMF.NPSCCAKTCDNCLKEFrwvekdVTNIARQlVDLVMMTKQTFSTT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03739 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ADNPLGLNHSNNYNSTHPRSRKNLLPLLQSDDPDGNSSHNKHPSTVGKRKSSQYKMDQRLPSIAEIQE
2) ASTGQITLNLLPGNSNDKNQGTEQQVPIKNSDNDQARVSIGSTEKIVSEKNPKKDVKRQKASS
3) ATNTSTNCDDFEERTVQSKKRAAKTRTRQEI
4) GSSTRHPHRDGKNSSLKDASKELISTNTPSS
5) LHGEMTKLGSSKTNRKRSKKAANIENKARQKKQ
6) SEPQAKNIDIEDGPSGSSSLVSEKDIGLKTNKDDINNEQHNAVVVPESQSANKDVTDGPA
7) SSSYNVNKMDSVSRNRNPTQESMHQQTESGTMEKNSSHL
8) TARLTQDEERQKSHSMASTTAHQGHHPTSI
367
824
2173
80
754
561
1365
1572
434
886
2203
110
786
620
1403
1601










Molecular Recognition Features






MoRF SequenceStartStop




NANANA