<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03737

Description Uncharacterized protein
SequenceMEGAAASHPAAAAHWMAGEEPGLRRNIINNMVKKFMAITNSQQDHHYRDIQNYAVRCEQDALNKTTNKEDYLRNIAQRIMNMEMKVRRSQSLQAGTTPSSQRPSSQQQNVCTTPQNSNQVPDQQRSSAPNSQTEMVAAPDRYLNFNTTAISPVAMRVHPSQQPQSQQHQQKAKQLHPTNVAGYNPISLNQIQGQSVIGQNFQQNHVLGQNASGSGTQQRQLAETPEQHQLLRMKQQCMRGNQQQNCTQRNQILPAQQAHLGKMQIGHPGVQNNQQNVGILCQPMTPPQSQVAAAQQSSLVCHSTQTSEPMVSAGEVDWREEIFQKIKSFKDAYLSEVLEYDRIVHVPKITEEQLRSLPVENAEKWKRIRNVKKIIAIMLDMLNTQKSNVHKGLQNMFPIFQQYLQQLRLSISKSKARNTVTKTGCQSQNCREGSQIVNLAGNTAPLTCDASRQQKYQEQVTNAKTSRMEQAIMTRTPTPQQESHGCHLLGVPSPCFLPEALQPSSTNIVQPVQVASPHVTSPSASVKSSVANPGVARVVSPSASVKSRLASPPSRLEGGAHAASPSSTSVESTLPTPIAKPGTVQAASPCTPVKSTSQSQLTKPGVAEVDSHRACVTSKLKSPVGKQQTAGASSPCASVKSTVALDVDSVTEFLMLGNVAPAAANGSSNQAIPTLVSAAPPTAAHPAEDQVHNGAEKIEAKKPISCLIETLLSSSPEALRDSANSMRLVIWEADRIPAPSPLPYRPRNGKMKRAFDHVTSRPVSSPLSSTDESCMTFECAAFEDESSGEYTAKRQKTQVKANDSLVYEIKTINNKLVDTEISIADENGTDEIIYQNGGGTLIKLSYSAMSLSTSLKSLLAASEMTIVMPVKLLVPVDYPKSSPILVDNDDEQRRLSDISHAISVAFGRAVDELPEPRSIEATARAWDGCVRRAVTEVAHRYGGGTFSSRRNQCRAGQLHGAMVSL
Length965
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.529
Instability index59.71
Isoelectric point9.03
Molecular weight105017.29
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03737
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     126.26|      22|      22|     521|     542|       1
---------------------------------------------------------------------------
  521-  542 (38.42/22.07)	SPSASVKSSVANP.....GVARVVSPS
  544-  566 (21.07/ 8.33)	....SVKSRLASPpsrleGGAHAASPS
  569-  590 (35.22/19.54)	SVESTLPTPIAKP.....GTVQAASPC
  593-  613 (31.55/16.63)	VKSTS.QSQLTKP.....GVAEVDSHR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     108.11|      22|      22|     235|     256|       2
---------------------------------------------------------------------------
  198-  214 (24.35/ 9.13)	GQN.......FQQNHV..LGQNASG....S
  215-  239 (27.78/11.49)	GTQQRqlaETPEQHQL..LRMKQQCM...R
  240-  260 (32.98/15.07)	GNQQQ...NCTQRNQI..LPAQQAHL....
  424-  450 (22.99/ 8.19)	GCQSQ...NCREGSQIvnLAGNTAPLtcdA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.42|      17|      24|      98|     115|       3
---------------------------------------------------------------------------
   98-  115 (29.17/16.38)	PSSQR...PSSQQQNVcTTPQ
  121-  140 (26.25/ 9.79)	PDQQRssaPNSQTEMV.AAPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     108.41|      23|      24|     720|     742|       5
---------------------------------------------------------------------------
  684-  704 (31.96/18.79)	AHPAEDQ..VHNGAEKIEAKKPI
  720-  742 (40.36/25.74)	RDSANSMRLVIWEADRIPAPSPL
  745-  767 (36.09/22.21)	RPRNGKMKRAFDHVTSRPVSSPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.28|      21|      68|      71|      93|       6
---------------------------------------------------------------------------
   25-   45 (35.86/18.35)	RNIINNMVKKFMAITNSQQDH
   73-   93 (34.42/23.83)	RNIAQRIMNMEMKVRRSQSLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.09|      27|     122|     153|     185|       7
---------------------------------------------------------------------------
  146-  175 (41.70/26.29)	NTTAispVAMRVHPSQQPQSQ..QHQQKAKQL
  273-  301 (43.39/24.91)	NQQN...VGILCQPMTPPQSQvaAAQQSSLVC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03737 with Med15 domain of Kingdom Viridiplantae
Unable to open file!