<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03735

Description Uncharacterized protein
SequenceMPNYVVPSKLIRSTIGQTYDYLSQDLIAQTTIEVSAEDYTLVNVGDFYVKKLHLSCLLTGDDFLNDDVVSAYIHCIKEQAKTDEKVYYEKPFLIAMLKRDGVYRIDEDSDNFITKIVKNYLFHELIFLPISSGNVHWYVAVVNPKKQEIQVLDSLGRDFDRVDLHKVEDMKLFRYKLANILLCWKTNMATETSDVVEVEDTDNSDDIEILGSRQRDNNSRWDMKESKTTAGFGVSPMFHKKIDLVESVSGWSEIHYKVAQCKSILIPVRVAGSFILVILDQESRTLYVLDPNPLNPAYKNNLNMRYTIKLLEITKYFSKAMHVACPGSRWTEDINLWRHLIVTNPVFDRWTWICTLRISGFNRMGSDGNFGKGPQELTGAVDLISRYKLLNHHSFFCKKPLPLAISDTNYLHNVVGDTEIRKGEGMELDQLFQDAYLREKTSYIQPFDMETLGQAFQLRETAPVDLPSAEKGTPTISGKSKIKSKDKVKKHKRHKEKDKDKYKDQKKHKHRHKDRSKDKDKDKDKDKEKEKEKKKEKSVHHDSGADRSKKHHEKKRKQEGVDDLASGHNPKKIQKRKNQ
Length579
PositionHead
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.09
Grand average of hydropathy-0.718
Instability index39.28
Isoelectric point8.96
Molecular weight67061.77
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cysteine-type peptidase activity	GO:0008234	IEA:InterPro
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03735
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     135.37|      30|      57|     479|     521|       1
---------------------------------------------------------------------------
  490-  521 (50.00/35.77)	KHkrHKEKDKDKYKDQKKHKHRHKDRSKDKDK
  522-  549 (38.55/12.09)	....DKDKDKEKEKEKKKEKSVHHDSGADRSK
  550-  579 (46.82/14.89)	KH..HEKKRKQEGVDDLASGHNPKKIQKRKNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.25|      14|      18|     431|     448|       3
---------------------------------------------------------------------------
  431-  448 (20.92/21.03)	LFQDAYLREKTsyiqPFD
  452-  465 (25.33/14.04)	LGQAFQLRETA....PVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.19|      20|     210|     174|     194|       5
---------------------------------------------------------------------------
  174-  194 (31.52/27.96)	RYKLAN..ILLCwKTNMATETSD
  386-  407 (32.67/21.81)	RYKLLNhhSFFC.KKPLPLAISD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03735 with Med19 domain of Kingdom Viridiplantae
Unable to open file!