<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03733

Description Uncharacterized protein
SequenceMDASAVGAAAAGPPNPAGDQQSRAERLSAGVQQQLNLEGMRARAVGLYKAISRILEDFDAIARANPNASPKWQDVLGQFSMVSMELFNIVEDIKKVSKVFVVYPRNTRIDMIGSTCETAEKIIAECRKNYGLGARQGTNLGPTLDKAQAAKIQEQEGLLRAAVNYGEGLRVPGDQRQLSSLPSHLVDVLPFGDGAHNFGDNSGVYPKNTSTFVPNVVNAQGNPMQVSGGQLLGRPAPSPGATGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTAQQHRQKLMQTSQQQQLHTQQQLRPSAAGMLAQNTIPQLQDLQGQSQQKLQVPGQQQMQYNQALSQQYQNRQMQAGRMQPGMSQSQLNQGNQLRSHISQFTGAANSAMFTAAQASSNSQMMANIPGTMQSQSLLPQMQALNHVWYGRRKFYQHDGNAAAAAIQHASKCSELATRHDRPPEPDTKSQLSPAEAAKPAMIQTMDV
Length481
PositionHead
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.614
Instability index49.47
Isoelectric point9.36
Molecular weight52117.98
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03733
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.24|      23|      24|     318|     340|       1
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  288-  328 (27.92/10.99)	QTSQQQQLHTQQqlrpsaagmlaqntipqlQDLQGQSQQKL
  329-  356 (34.33/15.30)	QVPGQQQMQYNQ............alsqqyQNRQMQA.GRM
  357-  377 (23.99/ 8.35)	Q.PGMSQSQLNQ.................gNQLRSHISQ..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     221.52|      71|      96|      18|      89|       2
---------------------------------------------------------------------------
   18-   89 (114.03/74.91)	GDQQSRAERLSAGVQQQLNLEGMRARAVG..LYKAISRILEDFDAIARANPNASPKWQdVLG...QFSMVSMELFNI
  113-  188 (107.50/66.11)	GSTCETAEKIIAECRKNYGLGARQGTNLGptLDKAQAAKIQEQEGLLRAAVNYGEGLR.VPGdqrQLSSLPSHLVDV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      97.39|      16|      16|     239|     254|       3
---------------------------------------------------------------------------
  190-  206 (23.78/11.35)	PFGDGAHNFgDN.SGVY.P
  208-  223 (24.24/11.71)	NTSTFVPNV.VN.AQGN.P
  239-  254 (30.29/16.38)	PGATGTPNF.EN.VSTP.P
  256-  273 (19.07/ 7.71)	PYANSPRSG.TNmMNTPsP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.91|      35|      50|     380|     417|       5
---------------------------------------------------------------------------
  380-  417 (54.91/40.36)	GAANSAmftAAQASSNSQMMA...NIPGTMQSQSLLPQMQA
  433-  470 (55.00/32.10)	GNAAAA...AIQHASKCSELAtrhDRPPEPDTKSQLSPAEA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03733 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AIQHASKCSELATRHDRPPEPDTKSQLSPAEAAKPAMIQTM
2) ANSAMFTAAQASSNSQMMANIPGTMQSQSL
3) HNFGDNSGVYPKNTSTFVPNVVNAQGNPMQVSGGQLLGRPAPSPGATGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTAQQHRQKLMQTSQQQQLHTQQQLRPSAAGMLAQNTIPQLQDLQGQSQQKLQVPGQQQMQYNQALSQQYQNRQMQAGRMQPGMSQSQLNQGNQLRSHISQFTG
439
382
196
479
411
380










Molecular Recognition Features






MoRF SequenceStartStop




NANANA