<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03732

Description Uncharacterized protein
SequenceMDASAVGAAAAGPPNPAGDQQSRAERLSAGVQQQLNLEGMRARAVGLYKAISRILEDFDAIARANPNASPKWQDVLGQFSMVSMELFNIVEDIKKVSKVFVVYPRNTRIDMIGSTCETAEKIIAECRKNYGLGARQGTNLGPTLDKAQAAKIQEQEGLLRAAVNYGEGLRVPGDQRQLSSLPSHLVDVLPFGDGAHNFGDNSGVYPKNTSTFVPNVVNAQGNPMQVSGGQLLGRPAPSPGATGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTAQQHRQKLMQTSQQQQLHTQQQLRPSAAGMLAQNTIPQLQDLQGQSQQKLQVPGQQQMQYNQALSQQYQNRQMQAGRMQPGMSQSQLNQGNQLRSHISQFTGAANSAMFTAAQASSNSQMMANIPGTMQSQSLLPQMQALNQYSLTGGHPQRSHPSQMLTDQMFGMGGANSTSMMGMQQQQQYNMQANAQNLQQGMTGLQNQTQNPNFPQQRQQNQQ
Length495
PositionHead
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.698
Instability index49.12
Isoelectric point9.51
Molecular weight53803.67
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03732
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.00|      23|      24|     318|     340|       1
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  318-  340 (43.34/14.80)	QD....LQGQSQQKLQVPGQQQMQYNQ
  347-  367 (36.18/11.16)	QN....RQMQA.GRMQ.PGMSQSQLNQ
  471-  494 (30.48/ 8.26)	QQgmtgLQNQTQNP.NFPQQRQ..QNQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.13|      15|      16|     268|     283|       2
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  268-  283 (25.18/15.49)	MNTpSPQQHL.TAQQHR
  287-  302 (20.95/ 7.04)	MQT.SQQQQLhTQQQLR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     103.04|      22|      63|     380|     401|       3
---------------------------------------------------------------------------
  380-  401 (37.87/15.79)	G............AANSAMFTAA..QASSNSQMMAN
  404-  439 (25.27/ 8.20)	GtmqsqsllpqmqALNQYSLTGGhpQRSHPSQMLTD
  445-  466 (39.90/17.02)	G............GANSTSMMGM..QQQQQYNMQAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     188.04|      60|     101|      47|     107|       4
---------------------------------------------------------------------------
   47-  107 (97.26/64.97)	LYKAISRILEDFDAIARANPNASPKWQdVLG...QFSMVSMELFNIV...EDIKKVSKVFVVYPRNT
  144-  209 (90.78/56.03)	LDKAQAAKIQEQEGLLRAAVNYGEGLR.VPGdqrQLSSLPSHLVDVLpfgDGAHNFGDNSGVYPKNT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.65|      14|      30|     211|     224|       5
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  211-  224 (26.89/16.86)	TFVPNVVNAQGNPM
  242-  255 (27.75/17.65)	TGTPNFENVSTPPM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03732 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HNFGDNSGVYPKNTSTFVPNVVNAQGNPMQVSGGQLLGRPAPSPGATGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTAQQHRQKLMQTSQQQQLHTQQQLRPSAAGMLAQNTIPQLQDLQGQSQQKLQVPGQQQMQYNQALSQQYQNRQMQAGRMQPGMSQSQLNQGNQLRSHISQFTGAANSAMFTAAQASSNSQMMANIPGTMQSQSLLPQMQALNQYSLTGGHPQRSHPSQMLTDQMFGMGGANSTSMMGMQQQQQYNMQANAQNLQQGMTGLQNQTQNPNFPQQRQQNQQ
196
495










Molecular Recognition Features






MoRF SequenceStartStop




NANANA