<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03731

Description Uncharacterized protein
SequenceMDASAVGAAAAGPPNPAGDQQSRAERLSAGVQQQLNLEGMRARAVGLYKAISRILEDFDAIARANPNASPKWQDVLGQFSMVSMELFNIVEDIKKVSKVFVVYPRNTRIDMIGSTCETAEKIIAECRKNYGLGARQGTNLGPTLDKAQAAKIQEQEGLLRAASDYPGLRVPGDQRQLSSLPSHLVDVLPFGDGAHNFGDNSGVYPKNTSTFVPNVVNAQGNPMQVSGGQLLGRPAPSPGATGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTAQQHRQKLMQTSQQQQLHTQQQLRPSAAGMLAQNTIPQLQDLQGQSQQKLQVPGQQQMQYNQALSQQYQNRQMQAGRMQPGMSQSQLNQGNQLRSHISQFTGAANSAMFTAAQASSNSQMMANIPGTMQSQSLLPQMQALNQYSLTGGHPQRSHPSQMLTDQMFGMGGANSTSMMGMQQQQQYNMQANAQNLQQGMTGLQNQTQNPNFPQQRQQNQQ
Length494
PositionHead
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.705
Instability index49.77
Isoelectric point9.51
Molecular weight53703.55
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03731
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     232.75|      54|      69|     291|     346|       3
---------------------------------------------------------------------------
  283-  338 (92.66/30.47)	QKLMQTSQ...QQQL...HTQQQLRPSaaGML.............................AQNTIPQLQDLQGQSQQ...........KLQVPGQQQMQYN
  339-  400 (75.38/21.22)	QALSQQYQ...NRQM...QA.GRMQP...GM..............................SQSQLNQGNQLRSHISQftgaansamftAAQASSNSQMMAN
  408-  492 (64.71/17.29)	QSLLPQMQalnQYSLtggHPQRS.HPS..QMLtdqmfgmgganstsmmgmqqqqqynmqanAQNLQQGMTGLQNQTQN...........P.NFP..QQRQQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.54|      16|      47|     189|     205|       9
---------------------------------------------------------------------------
  189-  205 (26.87/22.30)	PFGDGAHNFgDNSGVYP
  238-  253 (30.67/19.50)	PGATGTPNF.ENVSTPP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03731 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HNFGDNSGVYPKNTSTFVPNVVNAQGNPMQVSGGQLLGRPAPSPGATGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTAQQHRQKLMQTSQQQQLHTQQQLRPSAAGMLAQNTIPQLQDLQGQSQQKLQVPGQQQMQYNQALSQQYQNRQMQAGRMQPGMSQSQLNQGNQLRSHISQFTGAANSAMFTAAQASSNSQMMANIPGTMQSQSLLPQMQALNQYSLTGGHPQRSHPSQMLTDQMFGMGGANSTSMMGMQQQQQYNMQANAQNLQQGMTGLQNQTQNPNFPQQRQQNQQ
195
494










Molecular Recognition Features






MoRF SequenceStartStop




NANANA