<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03730

Description Uncharacterized protein
SequenceMDASAVGAAAAGPPNPAGDQQSRAERLSAGVQQQLNLEGMRARAVGLYKAISRILEDFDAIARANPNASPKWQDVLGQFSMVSMELFNIVEDIKKVSKVFVVYPRNTRIDMIGSTCETAEKIIAECRKNYGLGARQGTNLGPTLDKAQAAKIQEQEGLLRAAVNYGEGLRVPGDQRQLSSLPSHLVDVLPFGDGAHNFGDNSGVYPKNTSTFVPNVVNAQGNPMQIIAFHKSNHQPDPTQTFDVSGGQLLGRPAPSPGATGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTAQQHRQKLMQTSQQQQLHTQQQLRPSAAGMLAQNTIPQLQDLQGQSQQKLQVPGQQQMQYNQALSQQYQNRQMQAGRMQPGMSQSQLNQGNQLRSHISQFTGAANSAMFTAAQASSNSQMMANIPGTMQSQSLLPQMQALNQYSLTGGHPQRSHPSQMLTDQMFGMGGANSTSMMGMQQQQQYNMQANAQNLQQGMTGLQNQTQNPNFPQQRQQNQQ
Length513
PositionHead
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.706
Instability index48.92
Isoelectric point9.39
Molecular weight55881.91
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
regulation of flower development	GO:0009909	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03730
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     350.46|      62|      63|     363|     425|       1
---------------------------------------------------------------------------
  222-  270 (67.47/17.89)	NPMQIIAFHKSNHQ.....PD.....PTQ.......TFDV..SGGQlLGR..PAPS..PGATGTPN...................FENVST
  271-  338 (66.79/17.64)	PPMPYANSPRSGTNMM.NTPSpqqhlTAQ.......QHRQ..KLMQ.TSQ........QQQLHTQQ..QLRPSaagmlaqntIPQLQDL..
  339-  401 (78.03/21.71)	.......QGQSQQKL..QVPG...qqQMQynqalsqQYQN..RQMQ.AGRMQPGMS..QSQLNQGN..QLRSH.........ISQFTGAAN
  402-  456 (74.04/22.40)	SAMFTAAQASSNSQMMaNIPG.....TM........QSQSllPQMQ.A......LN..QYSLTGGH..PQRSH.........PSQMLT...
  457-  513 (64.13/16.68)	DQMFGMGGANSTSMM.....G.....MQQ......qQQYN..MQAN.AQNLQQGMTglQNQTQNPNfpQQRQQ.........NQQ......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     188.04|      60|     101|      47|     107|       2
---------------------------------------------------------------------------
   47-  107 (97.26/62.65)	LYKAISRILEDFDAIARANPNASPKWQdVLG...QFSMVSMELFNIV...EDIKKVSKVFVVYPRNT
  144-  209 (90.78/54.01)	LDKAQAAKIQEQEGLLRAAVNYGEGLR.VPGdqrQLSSLPSHLVDVLpfgDGAHNFGDNSGVYPKNT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03730 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NPMQIIAFHKSNHQPDPTQTFDVSGGQLLGRPAPSPGATGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTAQQHRQKLMQTSQQQQLHTQQQLRPSAAGMLAQNTIPQLQDLQGQSQQKLQVPGQQQMQYNQALSQQYQNRQMQAGRMQPGMSQSQLNQGNQLRSHISQFTGAANSAMFTAAQASSNSQMMANIPGTMQSQSLLPQMQALNQYSLTGGHPQRSHPSQMLTDQMFGMGGANSTSMMGMQQQQQYNMQANAQNLQQGMTGLQNQTQNPNFPQQRQQNQQ
222
513










Molecular Recognition Features






MoRF SequenceStartStop




NANANA