<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03728

Description Uncharacterized protein
SequenceMAAPPPSLDYWRGFFSGARASIFDAIDAAIRVAAADHPDALRARRDAIAERLYTALVVLPSPSAQAPVPVAVEDAATRPDRRLLLPEGAGGVPSLCSSDRAEAVTDNGDGAAARDDCDDRVADEAFRVKAALSNAQEKTEVELLELLRGLQQLEFTVDAIRVTEIGTAVKPLRKHGSKQIRQLVRSLIDGWKAVVNDWVNNGGAIVDHTPQSMDGSCLEQEEGGLPSPPMDEAALFATPYIRTNAKEDAQQRYPANQDPAKKQLPMGQGYDPEQNWKLDQSAMRQSQPYEPSNWQKKQQSVTGARQRPSTATHGPWTPQKMHLEPKFSEMRPKRQQDTSVSQRRPKPTTPIQLPSQVDQSSVQVNTKLEATKRMLQEGYQEFNNAKKQRTIQVVDPQDLPNQRNRNLQPSCKSRNSSSNSLRNRLGIRR
Length429
PositionUnknown
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.782
Instability index59.12
Isoelectric point8.92
Molecular weight47547.74
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03728
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     136.34|      32|      36|     283|     315|       1
---------------------------------------------------------------------------
  239-  268 (34.07/15.09)	.....PYIRTNAKEDAQ..QRYPANQDPAKKqlPMGQ
  283-  315 (53.75/31.96)	MRQsQPYEPSNWQKKQQ..SVTGARQRPSTA..THGP
  321-  354 (48.51/24.80)	MHL.EPKFSEMRPKRQQdtSVSQRRPKPTTP..IQLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.37|      16|      44|      18|      39|       2
---------------------------------------------------------------------------
   18-   39 (22.79/24.17)	ARASIFDAI.DAAIRvaaadhPD
   64-   80 (25.58/13.27)	AQAPVPVAVeDAATR......PD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.11|      27|      36|     124|     150|       3
---------------------------------------------------------------------------
  124-  150 (40.47/28.84)	EAFRVK...AALSNAQEKTEVELLELLRGL
  158-  187 (37.65/26.35)	DAIRVTeigTAVKPLRKHGSKQIRQLVRSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03728 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GGAIVDHTPQSMDGSCLEQEEGGLPSPPMDEAALFATPYIRTNAKEDAQQRYPANQDPAKKQLPMGQGYDPEQNWKLDQSAMRQSQPYEPSNWQKKQQSVTGARQRPSTATHGPWTPQKMHLEPKFSEMRPKRQQDTSVSQRRPKPTTPIQLPSQVDQSSVQVNTKLEATKRMLQEGYQEFNNAKKQRTIQVVDPQDLPNQRNRNLQPSCKSRNSSSNSLRNRLGIRR
202
429










Molecular Recognition Features






MoRF SequenceStartStop




1) SLDYWRGFF
7
15