<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03727

Description Uncharacterized protein
SequenceMAAPPPSLDYWRGFFSGARASIFDAIDAAIRVAAADHPDALRARRDAIAERLYTALVVLPSPSAQAPVPVAVEDAATRPDRRLLLPEGAGGVPSLCSSDRAEAVTDNGDGAAARDDCDDRVADEAFRVKAALSNAQEKTEVELLELLRGLQQLEFTVDAIRVTEIGTAVKPLRKHGSKQIRQLVRSLIDGWKAVVNDWVNNGGAIVDHTPQSMDGSCLEQEEGGLPSPPMDEAALFATPCTTIQLSEFFDEMDDDGNIRTNAKEDAQQRYPANQDPAKKQLPMGQGYDPEQNWKLDQSAMRQSQPYEPSNWQKKQQSVTGARQRPSTATHGPWTPQKMHLEPKFSEMRPKRQQDTSVSQRRPKPTTPIQLPSQVDQSSVQVNTKLEATKRMLQEGYQEFNNAKKQRTIQVVDPQDLPNQRNRNLQPSCKSRNSSSNSLRNRLGIRR
Length446
PositionUnknown
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.777
Instability index59.31
Isoelectric point6.57
Molecular weight49446.71
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03727
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.91|      18|      34|     262|     280|       1
---------------------------------------------------------------------------
  262-  280 (26.47/17.29)	AKEDAQQRYPANQDpAKKQ
  299-  316 (34.44/17.95)	AMRQSQPYEPSNWQ.KKQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.00|      16|      38|     317|     332|       2
---------------------------------------------------------------------------
  317-  332 (29.27/17.25)	SVTGARQRPSTATHGP
  356-  371 (29.73/17.64)	SVSQRRPKPTTPIQLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.50|      19|      35|      61|      80|       4
---------------------------------------------------------------------------
   61-   80 (28.75/18.77)	SPSAQApVPVAVEDAATRPD
   98-  116 (32.76/16.64)	SDRAEA.VTDNGDGAAARDD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03727 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GGAIVDHTPQSMDGSCLEQEEGGLPSPPMDEAALFA
2) SEFFDEMDDDGNIRTNAKEDAQQRYPANQDPAKKQLPMGQGYDPEQNWKLDQSAMRQSQPYEPSNWQKKQQSVTGARQRPSTATHGPWTPQKMHLEPKFSEMRPKRQQDTSVSQRRPKPTTPIQLPSQVDQSSVQVNTKLEATKRMLQEGYQEFNNAKKQRTIQVVDPQDLPNQRNRNLQPSCKSRNSSSNSLRNRLGIRR
202
246
237
446










Molecular Recognition Features






MoRF SequenceStartStop




1) SLDYWRGFF
7
15