<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03725

Description Uncharacterized protein
SequenceMEAVVAIGGSCREAAAAEEEDGGEQWREEEAEAEAEAVYCAVGKEAGKEWKANLIWVLAAFPRMRRRRIVFIHVHRPPSRVNMMGAWVPVSQLAEQEVNAYRQLEEERISKVLDDLLDICKSQKVNASKIIFSCDDIARGLLQLVDDHGITDLVMGAASDRAYSRKMRAPRSKKAQKVQLKASPSCKIWFVCKGNLICTREVNEGLNRTESSTTSTSPRSSTSDYSRSRSSPRVHSLSSEPFSMQDPAEPTTSSVDQTPIREDNAIDHGTEGFNHEAVAVASSSTVPVSENVEVEQRSAAAGVQSLQEIEENSPTPSGHGSEDAGDVSDAYDKFKDAVIEAENLRHEAYEESRRRQKAERDLADATRIANEAESSHQREARHRKEVEERLARERAAMEQDRRELDDILEQTRKVDARAAELELQIMDSERMMSDLEAKLSESYGLLHHLRREHRRDNAAEAMAGSEDGEQRLTFLRLGLSELEEATNHFDESVRIRGDGSRGSVYRGDLRSMAVAVKMISHDVAVDEVGFCREVEAIGRARHPNLVTLVGACPEARAVVYEFVPGGSLEDRLAAAAPPLPWHALCGVAHRTCSALAFLHSTQPRATVHGDVRPANILLDEECCSSKLAGLGMRRLVRNSGCVALSRAAVGYVDPRHLATGEMTPERDVYALGVVLLRLVTGKPPLMAKQEAREAAGGSKTWHEVFDASSGGWPMEVAREVALVGLKCCDVEEEKEPVGSRRLLEEACGVLEAAMSAAPGRSWSSVSSSDGEGGAPSYFLCPIRKEVMRDPQIAGDGFSYEAEAIREWLRSGRDTSPMTNLKLRRRELVPNHPLRDAIHDWRLRRAMRTNCTTGLDSY
Length857
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.518
Instability index56.41
Isoelectric point5.54
Molecular weight94694.16
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



ECO:0000256	ARBA:ARBA00003861

GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03725
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     307.90|      89|     104|     559|     655|       1
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  507-  544 (39.23/17.36)	..................................................G...DLRSMAVAVKMISHD..VAVDEVGFCREVE.....AIGRAR....HPN
  559-  655 (134.04/113.15)	VYEFvpgGSLEDRLAAAAPPLPWHAlcgVAHRTCSALAFLHSTQPrATVHG...DVRPANILLDEECCS..SKLAGLGMRRLVRNSgCVALSRAAVGYVDPR
  668-  760 (134.63/87.46)	VYAL...GVVLLRLVTGKPPLMAKQ...EAREAAGGSKTWHEVFD.ASSGGwpmEVAREVALVGLKCCDveEEKEPVGSRRLLEEA.CGVL.EAAMSAAPGR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.41|      11|      61|     159|     171|       2
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  159-  171 (17.57/16.36)	SDraYSRKMRAPR
  223-  233 (21.84/12.69)	SD..YSRSRSSPR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     186.65|      46|      62|     350|     396|       3
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  345-  391 (69.57/40.62)	RHEAYEESRRRQKaERDLADATRI....ANEAESSHQREARHR...KEVEERLA
  392-  440 (62.44/32.40)	RERAAMEQDRRE..LDDILEQTRKvdarAAELELQIMDSERMM...SDLEAKLS
  441-  484 (54.64/27.46)	ESYGLLHHLRREH.RRDNA.AEAM....AG.SEDGEQRLTFLRlglSELEE...
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.89|      17|      70|     204|     220|       4
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  204-  220 (29.71/22.76)	EGLNR..TESSTTSTSPRS
  271-  289 (22.18/14.87)	EGFNHeaVAVASSSTVPVS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     124.77|      28|     519|     236|     263|       7
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  236-  263 (49.23/29.51)	SLSSEPFSMQDPA..EPTTSSVDQTPIRED
  761-  785 (43.92/25.50)	SWSS..VSSSD.G..EGGAPSYFLCPIRKE
  791-  817 (31.62/16.20)	QIAGDGFSYEAEAirEWLRSGRDTSPM...
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03725 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NEGLNRTESSTTSTSPRSSTSDYSRSRSSPRVHSLSSEPFSMQDPAEPTTSSVDQTPIREDNAIDHGTEGFNHEAVAVASSSTVPVSENVEVEQRSAAAGVQSLQEIEENSPTPSGHGSEDAGDVSDAYDKFKDAVIEAENLRHEAYEESRRRQKAERDLADATRIANEAESSHQREARHRKEVEERLARERAAMEQDRRELDDILEQT
203
411










Molecular Recognition Features






MoRF SequenceStartStop




NANANA