<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03722

Description Uncharacterized protein
SequenceMDSDGEEYDAMWSARCSVSSSTGSLRDAGDQWDEQSLAVGEDKVFVAVDEDIEHGKSTFLWAVQNLATDGSKIVVAHVHSPAQALSKIHCTRMKPEEISDYLMLEREEAEKKLDEYALVAKNTGKDMEIDCKKVIIDMDDVAKGLEELITLHGITRLVMGAAADQHYSEEMKEPNSKIALKLMETASSSCKIWFTCNGNLICTREPNENLLAIYVPPAQSNMVPLSVCSISSQMSSIELKNEAPSSEEYTLRSLAQSAMSDWDYIFGDWGRTGYGSLRTDDAISIPEATTLAAIVDDTKKQRSVMHSPRESDSVNFLSPACDPEQEEEESNLEEDMHDILNEACTRAELLKEEVDGESSKRRKAEMDLLIALQRVQESEKTYLHEVNQRKETEKTLARQRLEIDEMKRQHNALHDELQDTKKQKLLLEQRISEIKSAAKDYVEEITEYFIQESCEEAKKCQKIKMDLLAVLQRVKYVENLNRNEKMQRKDMEEKIARQRMEIEETKRQRDELYHELKDVKEQKLCLERVDSSEETKRRRKAESEMISALKRVHDLEHQYLNELKRREAVEETLARQKEEIQETKRKLNKIHSRYMTEIKSITKAHEEKLAESKRFIQKIQAKYDKTLHERDTAITESEKLRQMNRDGASMIATTQITDFSFFELRQATQDFDTALKIGTGRFMNVYKGFIRNTTIAVMLLHPQDLQGQLEFHQEVVVLSRLRHPNVMMLIGACPEAFGMVYEFLPNGSLEDQLSCKKNTPPLTWKVRTRIIGEICSALTFIHSQKPHPVVHGNLNPMNILLDANFVSKLHACQLLRKYNTRNNTSGTSSYIDPEFLSTGELAPRCDVYSFGIIILRLLTGKSPENITTIVEDAMEKRQLHSIMDISAGSWPFMQANQLAHLGLRCANLSGRHRPDLTGEVWGVIKPLLKDASQNYGCKQPFEALSDDAHAPSYFICPILQEVMTDPHIAADGYTYEVNAIREWIDGGNARSPMTNLRLENRELTPNRVLRSAILEWRQHRR
Length1021
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.600
Instability index52.55
Isoelectric point5.57
Molecular weight116917.47
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03722
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     145.25|      26|      27|     360|     385|       1
---------------------------------------------------------------------------
  360-  382 (32.73/17.77)	...................KR.....RKAEMDLLIALQR..VQESEK...TY
  383-  410 (26.71/13.11)	LHE..............vnQR.....KETEKTL..ARQRleIDEMKR...QH
  413-  441 (20.19/ 8.07)	LHD..................elqdtKKQKLLLEQRISE..IKSAAK...DY
  442-  481 (19.48/ 7.52)	V..eeiteyfiqesceeakKC.....QKIKMDLLAVLQR..VKYVEN...LN
  482-  512 (18.48/ 6.75)	RNE...............kMQ.....RK.DMEEKIARQRmeIEETKRqrdEL
  536-  559 (27.66/13.85)	..K................RR.....RKAESEMISALKR..VHDLEH...QY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.15|      16|      23|     640|     655|       2
---------------------------------------------------------------------------
  640-  655 (28.60/18.17)	LRQMNRD..GASMIATTQ
  664-  681 (22.55/12.88)	LRQATQDfdTALKIGTGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     181.82|      54|     179|     707|     792|       3
---------------------------------------------------------------------------
  735-  792 (84.46/118.01)	EAFGMVYEFLPNGSleDQLSCKKNTPPLTWKVRTRIIgEICSALTFIHSQkPHPVVHG
  919-  972 (97.36/56.97)	EVWGVIKPLLKDAS..QNYGCKQPFEALSDDAHAPSY.FICPILQEVMTD.PHIAADG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     249.86|      87|     211|      16|     115|       4
---------------------------------------------------------------------------
   16-  115 (125.49/120.26)	CSVSSSTGS..LRDAGDQWDEQSL.AVGEDKVfvaVDEDI...EHGKSTFlwavQNLATDGSkIVV.......AHVHSPAQALSKIHCtrmkPEEiSDYLML.......EREEAEKKLDE
  228-  334 (124.37/83.14)	CSISSQMSSieLKNEAPSSEEYTLrSLAQSAM...SDWDYifgDWGRTGY....GSLRTDDA.ISIpeattlaAIVDDTKKQRSVMHS....PRE.SDSVNFlspacdpEQEEEESNLEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.51|      34|      34|     560|     593|       5
---------------------------------------------------------------------------
  560-  593 (55.71/33.36)	LNELKR.REAVEETLARQKEEIQETKRKLNK.IHSR
  595-  630 (48.80/28.38)	MTEIKSiTKAHEEKLAESKRFIQKIQAKYDKtLHER
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03722 with Med32 domain of Kingdom Viridiplantae
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