<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03721

Description Uncharacterized protein
SequenceMDGVGLGVHRRWDTSGSGSQYSFRTSVSSVAEISSEVEVRPLPAAAAAPAEDKVFVAVAADVKHGKSALQWTLQNLAKDGAKVVIAHVHCPAQMIPMMGAKVHYTKMNTKQVKDYRNKEREKAEEKLDEYLLICRKLKVSCEKLIIEEEDIAKGLADIVALHGVTKLVMGAAADKHYSRKMNTPKSKTALKILEAADPSCKIWFTCKGHLICTREANTTVPAIPPSPAYTVASTLSSSSISSRMRSMSLHTSESEASSSRGSPRHDLNRSRTEVAKYPSQGSDTAPSQLFGHSDQNVNDRPTRTVMGSIDSWDEFGRSQNSCYDSSRNSDTVRVSGSAKQQPMYEPDDDHFASPRKLENSCDDADIYGRLQEALRETQDLKKETYKESTKRRNAERNLISALQKASHFASEVKELENMYQKEVMHRKITEEALEKQIQETEETERHCNAIYDKLHDVEEQKLMVEQHITEMQAVLKECEDRLHDVEEQKLAVEQRITEMQAVLKEREDKLHDVEEQKLMVEYRITEMQLVLKEREEKLAESKYLLQVLQADKEKLQQERDAAVSEAQDLRLKNKQRISMPGEELNTEFSSYELEQATRGFDQELKIGEGGFGSVYKGTLRNTTVAIKLLHPHSMQGQSEFDQEIVVLSRVRHPNLVTLIGACREAFGLVYEFLPKGSLEDRLACLNKTPPLTWQVRTKIIYEMCSALTFLHSNKPHPIVHGDLKPANILLDANFVSKLGDFGICRLLIQSNTTTAAATTRLYRTTTPKGTFAYMDPEFLTTGELTPRSDVYSLGIIILRLLTGKPPQKIAEVVEDAIESGELHSILDPSAGSWPFVQANQLAHLGLRCAEMSRRRRPDLATDVWKAVKPLMKAASLTAGRPSFVARPDDAPPPSYFVCPIFQEEMNDPHIAADGFTYEREAIKGWLDSGHDTSPMTNLTLEHRELIPNRALRSAILEWQQQRQRHQQQEDDDDCT
Length975
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.577
Instability index50.47
Isoelectric point6.00
Molecular weight109801.08
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



ECO:0000256	ARBA:ARBA00003861

GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03721
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     175.81|      24|      26|     453|     476|       1
---------------------------------------------------------------------------
  414-  435 (32.54/22.17)	ELENMYQKEVM.HRKITE.EALEK
  453-  476 (48.97/37.35)	KLHDVEEQKLMVEQHITEMQAVLK
  481-  504 (46.72/35.27)	RLHDVEEQKLAVEQRITEMQAVLK
  509-  532 (47.57/36.05)	KLHDVEEQKLMVEYRITEMQLVLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     222.37|      53|      54|     301|     353|       2
---------------------------------------------------------------------------
  227-  300 (63.89/42.40)	PAYTVASTLSSSSISSRmrsmslhTSESEASSSR.GSPRHDLnrsrtevakypsqgSD...TAPSQLF.GHSDQNVNDR
  301-  353 (93.07/65.56)	PTRTVMGSIDSWDEFGR.......SQNSCYDSSR.NSDTVRV..............SG...SAKQQPM.YEPDDDHFAS
  354-  410 (65.41/43.61)	P.RKLENSCDDADIYGR.......LQEALRETQDlKKETYKE..............STkrrNAERNLIsALQKASHFAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.29|      34|      53|     578|     615|       3
---------------------------------------------------------------------------
  578-  615 (52.10/52.68)	SMPGEelnTEFSSyELEQATRGFDQEL..KIG..EGGFGSVY
  633-  670 (51.18/36.75)	SMQGQ...SEFDQ.EIVVLSRVRHPNLvtLIGacREAFGLVY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     181.82|      60|      72|      50|     113|       4
---------------------------------------------------------------------------
   50-  113 (95.22/113.22)	AEDKV..FVAVAADVKHGKSALQWTLQNLAKDGAKVViaHVHCPAQMIpmMGAKV..HYT.KMNTKQVK
  123-  187 (86.60/84.54)	AEEKLdeYLLICRKLKVSCEKLIIEEEDIAKGLADIV..ALHGVTKLV..MGAAAdkHYSrKMNTPKSK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03721 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GRSQNSCYDSSRNSDTVRVSGSAKQQPMYEPDDDHFASPRKLENSCDDA
2) SRMRSMSLHTSESEASSSRGSPRHDLNRSRTEVAKYPSQGSDTAPSQLFGHSDQNVNDRPTRTVMGSIDS
316
242
364
311










Molecular Recognition Features






MoRF SequenceStartStop




NANANA