<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03720

Description Uncharacterized protein
SequenceMASGEPRPPSPAVAVAVAVRPGGSASRRAARWAAANLPAGDGRASAAAISVVHVIPSLRFVPSPSGEQVPAARVAREAAEAYARDRHSRAQEALRPFRRIFAAAAAAAANATVETVVLEGDGVAEALVRYAADSGVRSLVLGSASLGWFRRAMSVPDVATAVLKTTEISCNVFVVSKRRLTLKVTRHPQTSRSGTGLRIQSVSQKAFAQSYRSLLFDNFPEDGIHPDSCCQSRISHCGPTNARQSSESHRQILFKSLGSRTTVVEGYKNHGFRSPFKEAHYPDSNSSEECQSIDEVAKLRKELQDTLVMYDKACKDLVHAKKKIQVLSSECSEEARKVEHALQKEEALKQVVADEKAKHLEAIEEVEQAKKSFTREAYSRNKAEMVASMISLDKAKVVDAILSTSKNCRRYKKHEIELATDNFSEARKIGEGGYGNVYRCTLDHTEVAVKVIQQDSLDKTDEFLREVDILSQLQHPNLVLLLGFCPEIGCLVYEYLQNGSLEDQLLNNKGRQPLHWFLRFQIIFDVSCGLAFLHGRKPEPIVHRDLKPANILLNKNYVGKIGDAGFAKLISDLVPDWQTEYKETIIAGTLYYMDPEYQQTGTVRPKSDLFALGVIILQMLTGKRPNGLIVSAENAIRNGMLADILDKSQTDWPLVEAEMLAKLGLRCTALKCRERPGLESEVLPKLQEILHRITSTVNLRSPKLNVPSHFICPIMQEVMNDPYVAADGHTYEQQAIKAWLKKHKVSPVTRRVLPNSSVIPNHSLRAAIQQWKAQAAHAKA
Length780
PositionTail
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.296
Instability index55.17
Isoelectric point9.05
Molecular weight86251.71
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03720
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.83|      30|      42|     284|     317|       1
---------------------------------------------------------------------------
  284-  317 (43.00/44.65)	SNSSEECQSIDEVakLRKElqDTL..VMYDKACKDL
  329-  360 (44.83/32.09)	SECSEEARKVEHA..LQKE..EALkqVVADEKAKHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.20|      12|      23|      70|      81|       2
---------------------------------------------------------------------------
   70-   81 (19.60/10.28)	PAARVAREAAEA
   96-  107 (19.60/10.28)	PFRRIFAAAAAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.47|      12|      20|     108|     120|       3
---------------------------------------------------------------------------
  108-  120 (15.29/15.20)	AANATVETVVLeG
  131-  142 (20.18/14.00)	AADSGVRSLVL.G
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     281.57|      86|     137|     428|     514|       6
---------------------------------------------------------------------------
  428-  514 (144.32/119.49)	KIGEGGYGNV.......YRCTLDHTEVAVKVIQQDSLDKTDEFLREVDILSQLQHPNLVLLLGFCPEiGCLV..YEYLQNGSLEDQLLNNKGRQPL
  560-  654 (137.25/108.35)	KIGDAGFAKLisdlvpdWQTEYKETIIAGTLYYMDPEYQQTGTVRPKSDLFALGVIILQMLTGKRPN.GLIVsaENAIRNGMLADILDKSQTDWPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.56|      15|      35|       1|      15|       7
---------------------------------------------------------------------------
    1-   15 (27.34/13.11)	MASGEPRPPSPAVAV
   37-   51 (24.22/10.86)	LPAGDGRASAAAISV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.43|      43|      53|     185|     227|       8
---------------------------------------------------------------------------
  185-  227 (75.08/47.64)	TRHPQTSRSGTGLRIQSV.SQKAFAQSYRSLLFDNFPEDGIHPD
  240-  283 (70.35/44.19)	TNARQSSESHRQILFKSLgSRTTVVEGYKNHGFRSPFKEAHYPD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03720 with Med32 domain of Kingdom Viridiplantae
Unable to open file!