<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03713

Description Uncharacterized protein
SequenceMMGSSAPPQNLGPPMPMQFRPVIHQQQPPQFMQPGQQFRPVGQAMPGANIGMPGQMPHFQQPTQHLPHSGQVPPASQAYQPSSVPPPIVQPWGTAPGQNVPLVQPGHQQMSSSATLPLINSSETSSSDWQEHTSADGKKYYYNKKTRQSSWEKPAELMTPLERADASTEWKEFTTQEGRKYYYNKVTKQSKWTIPDELKIARELAEKASNPRADQETETTAGAPSGTTSNSVEPSSVPANQSSTTSMVAPSTLDAAANSVPPAAGPSHNMENTSSSSNTAMQNGGPSAVVTPVISTEIPSVASDAGISRANNEYPTLASTGDTQNGASAEELEEAKKTMAFPGKINVTPVEDKTSEEEPVTYANKLEAKNAFKALLESSNVESDWTWDQAMRVIINDKRYGALKTLGERKQAFNEYLNQRKKLEAEERRIKQRKARDDFLAMLEESKELTSSTRWSKAITMFEDDERFSAVERPREREDLFESYLMELQKKERARAAEEHKRHIAEYRAFLESCEFIKTSTQWRKVQERLEDDERCSRLEKIDRLEIFQEYIRDLEKEEEEHKRIHKEQVRRQERKNRDEFRKMLEEHVAEGMLTAKTRWRDYCAQVKDSSVYLAVATNTSGSMPKDLFEDVMEELEKQYQDDKARIKEAVKSGKIPMTTSWTLEDFQTAVTEDDTFKGITNINIKLIYDDQVERLREKEVKEAKKRQRLGENFSDLLYSIKEISASSTWDDSKALFEDSQEYKALDSETYSRELFEECVVHLKERLKEKERLREEEKARKEKEREEKERRKEKEKKEKERKEKEREKDKGKDRSRKDEMDIDAVDADSHGSKDKKREKDKEKKHKRRHHDTADDVSSERDEKDDSKKSRRHSSDRKKSRKHTHASDSDSENRHKRHKKDRDSSRRNGSRDDLEDGELGEDGEIH
Length925
PositionUnknown
OrganismOryza punctata (Red rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-1.239
Instability index53.37
Isoelectric point6.04
Molecular weight106362.67
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03713
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.71|      38|      40|     117|     156|       1
---------------------------------------------------------------------------
  117-  156 (65.52/45.24)	PLiNSSEtSSSDWQEHTSADGKKYYYNKKTRQSSWEKPAE
  160-  197 (74.19/42.91)	PL.ERAD.ASTEWKEFTTQEGRKYYYNKVTKQSKWTIPDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     159.12|      39|      40|     797|     836|       2
---------------------------------------------------------------------------
  797-  836 (63.40/33.27)	KEKERKEKEREKDKGKD.RSRKDEMDiDAVDADSHGSKDKK
  839-  878 (61.63/28.73)	KDKEKKHKRRHHDTADDvSSERDEKD.DSKKSRRHSSDRKK
  886-  911 (34.09/12.72)	SDSDSENRHKRHKKDRD.SSRRN............GSRD..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     156.15|      39|      40|     246|     284|       3
---------------------------------------------------------------------------
  223-  243 (30.05/12.47)	...APS..GTTSNSVEPSSVP...........AN...QSS
  246-  284 (68.90/36.67)	SMVAPSTLDAAANSVPPAAGPSH.NMENTSSSSNTAMQNG
  287-  326 (57.20/29.37)	SAVVTPVISTEIPSVASDAGISRaNNEYPTLASTGDTQNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     432.91|      61|      61|     443|     503|       4
---------------------------------------------------------------------------
  379-  446 (76.79/41.71)	SN..VESDWTWDQAMR.....VIINDKRYGALKTLGE...RKQAFNEYLNQRKK..L...EaeerrikQRKARDDFLA.M..................LEES
  447-  514 (95.56/53.70)	KE..LTSSTRWSKAIT.....MFEDDERFSAVERPRE...REDLFESYLMELQK..K...E.......RARAAEEHKR.H...........iaeyrafLESC
  515-  588 (66.10/34.88)	EF..IKTSTQWRKVQE.....RLEDDERCSRLEKI.D...RLEIFQEYIRDLEK..E.............E..EEHKRiHkeqvrrqerknrdefrkmLEEH
  590-  667 (58.18/29.83)	AEgmLTAKTRWRDYCA.....QVKDSSVYLAVATNTSgsmPKDLFEDVMEELEK..QyqdD.......KARIKEAVK..........sgkipmttswtLEDF
  668-  721 (54.95/27.77)	QT..AVTEDDTFKGITninikLIYDDQ....VERLRE...KE......VKE..A..K...K.......RQRLGENFSD.L..................LYSI
  722-  784 (81.33/44.61)	KE..ISASSTWDDSKA.....LFEDSQEYKALDSETY...SRELFEECVVHLKErlK...E.......KERLREEEKA.R..................KEKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     176.63|      38|      42|       3|      40|       5
---------------------------------------------------------------------------
    3-   40 (79.94/46.88)	GSSAPPQNLGPPMPMQFRPVIHQQQPPQFMQPGQQFRP
   42-   74 (66.43/37.81)	GQAMPGANIG..MPGQM.P..HFQQPTQHLPHSGQVPP
   86-  108 (30.26/13.54)	..........PPIVQPWGTAPGQNVP..LVQPGHQ...
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03713 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ERLREEEKARKEKEREEKERRKEKEKKEKERKEKEREKDKGKDRSRKDEMDIDAVDADSHGSKDKKREKDKEKKHKRRHHDTADDVSSERDEKDDSKKSRRHSSDRKKSRKHTHASDSDSENRHKRHKKDRDSSRRNGSRDDLEDGELGEDGEIH
2) MMGSSAPPQNLGPPMPMQFRPVIHQQQPPQFMQPGQQFRPVGQAMPGANIGMPGQMPHFQQPTQHLPHSGQVPPASQAYQPSSVPPPIVQPWGTAPGQNVPLVQPGHQQMSSSATLPLINSSETSSSDWQEHTSADGKKYYYNKKTR
3) TIPDELKIARELAEKASNPRADQETETTAGAPSGTTSNSVEPSSVPANQSSTTSMVAPSTLDAAANSVPPAAGPSHNMENTSSSSNTAMQNGGPSAVVTPVISTEIPSVASDAGISRANNEYPTLASTGDTQNGASAEELEEAKKTMAFPGKINVTPVEDKTSEEEPVTYA
771
1
193
925
147
363










Molecular Recognition Features






MoRF SequenceStartStop




NANANA