<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03708

Description Uncharacterized protein
SequenceMEEAVRVDLDKLPIKRLHAIDEAGNEHYPPDTSSEEQRLSAIRRIDFSWVIDKDAKKPKKDTAQQQQQQAWPWQGMMESLQQAQQELSVVIDLISTVEANDAVAVAGMLKPKSLPTETLVDTAVSAATKLQRVRHLSRYFKQSAKTMEQQFQKESRLQQNWKVKRQRFGGSGPGSEGFMFDLIDTSQLDTAAMPRLSSLPLIPIDQDSSGTLSVQVPQKSCRFLSLNFRGDSANGVENYGHKLKDGISSITSSETDNDDVNKSIKHAHSILRNIHKSIFEEQVFDMVIRETFVQSQGINVTGMREDFLQLAIGQECSLCLSLAHSGDGSDSEMVDHEDHANSEDASNLVLVTMNGKLDPLRKDVTGFPNPRSLEIYLLQLFHENILRKVREKSLNIGRYQSPAQVAGDDYGLLGHFCLTVAHRIFSNKVLVELESVVSRVPYLHLRSLPTWHSRTSSWSLCLKVPQPILAADRIAKPSDNHELKYKSRSQFNTKVIVKDSQISLMGEGSPSIAGSLTGKPSDGYLVNSYNCDLEDLPTMLLQQVASQVIHWLHEEALVLGMNVTRDFLCLYFDLEQGETLGLVANVDPDDTCGCISWYLTIDHPTEDGKMSADSQEFEKRRFLGYVSLEVLYSTLMDLINLCNAGAHH
Length648
PositionHead
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.374
Instability index46.29
Isoelectric point5.53
Molecular weight72574.25
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
production of miRNAs involved in gene silencing by miRNA	GO:0035196	IEA:EnsemblPlants
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03708
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.68|      24|     247|     194|     218|       1
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  194-  218 (39.48/32.03)	P..RLSSLPLIPiDQDSSGTLSVQVPQ
  441-  466 (44.20/30.88)	PylHLRSLPTWH.SRTSSWSLCLKVPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     252.58|      87|      95|     230|     324|       2
---------------------------------------------------------------------------
  230-  324 (122.76/119.70)	GDSANG..VENYGHKLKDGISSITSSeTDN...DDVNKSIKhAHSILRNIHksIFEEQVF.DMVIREtfVQSQGINVtGMREDFLQLAiGQECSL....CLSLAH
  326-  422 (129.82/92.69)	GDGSDSemVDHEDHANSEDASNLVLV.TMNgklDPLRKDVT.GFPNPRSLE..IYLLQLFhENILRK..VREKSLNI.GRYQSPAQVA.GDDYGLlghfCLTVAH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.84|      14|      15|     137|     151|       4
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  137-  151 (20.89/19.68)	SRyFKQSAKTMEQQF
  155-  168 (25.95/17.83)	SR.LQQNWKVKRQRF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.15|      13|      41|     467|     479|       5
---------------------------------------------------------------------------
  467-  479 (23.20/14.68)	PILAADRIAKPSD
  510-  522 (23.94/15.37)	PSIAGSLTGKPSD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03708 with Med17 domain of Kingdom Viridiplantae
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