<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03706

Description Uncharacterized protein
SequenceMRFGDAALAGLRVAERAYWKEFVDRVLKDTSSIDITASNIAVPTRLPVELQVLIKVMIHQILNTQPGAIPPLAFHWCCNQLLQHLVNSVRTQGQPTVEPNVHGHQRCRGAGWSSGIPERLADRNVSEDGGIGGVDSRRNIREMNGKIKETNASRESPRILKPTGEPNPSTGGIRIQNNRQEQPAEMTIFHPWKNITDISYYGCGGSLLDQSRHAMRSWVLKNIEKLAGHYGAEFNSLRAFEDRVFNETSSIDDYISKISTKMAILERPQSSSGIQHQGQMGNQTRLPTTVMQEQPQPQQQPHLMSNNHHQTHGGWQSNVARVQMITGVGEVNWREEMFQKISVLKNSFFSELTDFDRLLHNCQKTEEQLQSLPKKQADQYKRITKLKDAVRSALDLLQLQKSSIDEGMKVKFCKYESSIHSLFRFYRETKAKINEMNANRHNNQQEQPAGLPRQRITDRTPSSARRQNRTDNVIGQSEDKLRCRVESVVAKKKPIDRLINALRHSVEDDRTDVKRQKTRHVNSALANEIDAMNAKLIDTVVRIAGEKDGGTEIEFSYTAVSLAPDMKQLFAVYGTSPVKPVKLFVPADYPRSSPVVSNNNDDGDEQRRGMFGEISGMVSAAFHCALRELPPSMSVKQMASEWNSCVQMIMKKFAIRHGGGTFSSRHGQWMDCTVE
Length675
PositionTail
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.643
Instability index51.81
Isoelectric point9.25
Molecular weight76217.52
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03706
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     273.28|      88|     264|     102|     219|       1
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  106-  203 (148.00/119.45)	RCRGAG.WSSGIP.ERL..ADRNVSEDggiGGVD.SRRNIREMNGKI.KETNA..SRESPRILKPTGEPNpstGGIRIQNNRQEQPAEMtifhPWKNITDISYYGC
  424-  464 (59.28/27.17)	.....................................RFYRETKAKI.NEMNA..NRH.....................NNQQEQPAGL....PRQRITDRTPSSA
  482-  554 (66.00/45.16)	RCRVESvVAKKKPiDRLinALRHSVED...DRTDvKRQKTRHVNSALaNEIDAmnAKLIDTVVRIAGEKD...GGTEIE...........................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.95|      40|     215|       8|      48|       2
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    8-   47 (71.74/55.01)	LAGLRVAERAYWKEFVDRVLKDTSSIDITASNIAVP......................TRLP
  226-  287 (60.22/40.17)	LAGHYGAEFNSLRAFEDRVFNETSSIDDYISKISTKmailerpqsssgiqhqgqmgnqTRLP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03706 with Med15 domain of Kingdom Viridiplantae
Unable to open file!