<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03703

Description ATP-dependent DNA helicase
SequenceMQARGTHANQSEEGLRAGRPLAREAATAPTPGQTPLGGRHVGLGRPSPSVQGTPGPISPTDYLFIFFPAPHLGSTYLSRFPNLRCGVVRCEPDAGVASPRRARGCRERSLVDTLTSSTGLALLARTASSTGLGLLARTAGGACRFGGVATATRPTSGCSMYEEDNIQGELLLVQAELDDIQGQISALIDRQEELYERESQLKAMLEVSKASNNTINNTPSVGPKDWSGSFLWDSRADDVRFNVFGISSYRQNQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLHDGITLVVSPLLSLIQDQVMGLAALGIQAYMLASTTNKEVEKFVYKALDKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKVQFPSVPMIALTATATSKVQIDLIEMLHIPRCVKFVSTINRPNLFYKVFEKSPVGKVVIDEIANFISESYPNNESGIVYCFSRKECEQVAKELSERGILADYYHADMDVISREKVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILYYRPGDVPRQSSMVFYENCGLQNLYDIVRYCQSKRSCRRGAFFRHFGEAAQDCNGMCDNCTSSLELKEIDATHHTKIIVSLLHDIQLNDQRATLLQLVDKFKAKWKDLGCSNESIDLKKEGIEQLKEEFQHTAYATNAYVALGPLWKPALKGNRPVKLSVAFHSQDKGSGSKRTKRNQMSNLEAKLDDLRRELSSSNGGVFPHAVLSAQQISLLNRQKPTTVAELEKLIGKVKTVKYGSAIIELMLLHVDSEVAGGKACASKRQKKDKEDVICVESSEEDV
Length839
PositionUnknown
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.294
Instability index42.60
Isoelectric point8.46
Molecular weight92546.74
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
DNA helicase activity	GO:0003678	IEA:UniProtKB-EC
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03703
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     188.24|      56|      97|       2|      58|       1
---------------------------------------------------------------------------
    2-   58 (95.32/65.13)	QARGTHANQSEEGLRAGRPLAREAATAPTPGqTPLGGRHVGLGRPSPSVQGTPGPIS
  101-  156 (92.92/58.95)	RARGCRERSLVDTLTSSTGLALLARTASSTG.LGLLARTAGGACRFGGVATATRPTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.42|      12|     112|     478|     489|       2
---------------------------------------------------------------------------
  478-  489 (24.03/15.82)	YCFSRKECEQVA
  588-  599 (24.39/16.16)	YCQSKRSCRRGA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03703 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MQARGTHANQSEEGLRAGRPLAREAATAPTPGQTPLGGRHVGLGRPSPSVQGTPG
1
55










Molecular Recognition Features






MoRF SequenceStartStop




NANANA