<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03690

Description Uncharacterized protein
SequenceMQRYTGAGHNAGFGGGVPGRGVVAGGREKGRLEPSSFHGANYPANLRRQPQVAPYKLKLGAPDFYPQTLSCAEETLTKEYVQSGYKDTVEGIEEAREIVLSQIPYLSKPDIATKCKEALKKRFRAINESRAQKRKAGQVYGVPLSGSLLTKPGMYPEQMHSNEDTRRKWIEALVQPNRRLWSLAEQVPRSFRRKSLFNYLIRYNVPLLRASWLVKVTYLNQVQTSSNNVSSAAPDSLRSQHWTKDVIEYLQLLLDELCSKNGFFGLPSSQEQSLPCLVAGDSPIKLKTGASPASADVEEPSLHFKWSYMIRIVQCHLMEQLLVPSLLIEWVFNQLQERDSTEVLELLLPIVLSLVDTITLSQTYIHMLVEILIQRLSDASPGSLSVKNNPKRSSITSALVELLQYLILAVPDTFVSLDCFPLPSVVAPDVYGKGALLKIAGGGKIASSRRQNASRHLSCGYAICSVQRRASDLSLVANPNLQVRGAANVVQALDKALVTGNLTAAYTSVFNYLSDTLMEETWIKEVSPCLRSSLMWMGAVELSLVCSVFFICEWATCTFRDCRTSQCQNVKFSGSKDFSQVYMAVSLLKDKMNEINNLSSSKSSSQLAMKDHLKSGTLNHSSIKVTAMETASGFRDSTGSIDENNKKDIFSSPGPLHDIIVCWLDQHEISDASGFKSVDVFMTELIRSGIFYPQTYVRQLIVSGITIWNDSLFDLEKKTRHYKILKHLPGFCLFNILEEAKIAEDQVLYEIVSTYSSERRLVLSELSSGLATDANVEGRVPLSSCLQKQPDLLMDSTDDNHGRVAVQVEEVKLMISGLLNLGYSTLLAESGREETKKTKKGQTDLVDSEEDVGHAKTGCKDSSRTKRQKLDKNVFPFQGSPLVQSDEEDFWWVRKEQKQELFTVETIHQSIEQTSGGKTTVVQKTQNIAQLAAARIDGSQGASTSHVCDNNLSCPHHKPGTNSDILKDADHMSMLTLAEVGKSLKRLRLLERRSISIWLLKSIKQLIEGDEVKHSKANNSISASTVQHSGKIASGWRFGEDELLSVLYIMDTCCDLLSSVRLLIWLLSKIYIGRTTSGQVGRGVMHPKHKENQVFQVAEAFLFSSLLRYENILIAMDLLPEVLSVSMNRTVHKSGERQSTSVAFAYARYFLRKYRDVTSVARWERNFRSTSDKRLLAELDSGKSITGDSIISGISSGEELDGHVHKKLNGKAGVLPSMKEIVQRQTDEFLRNLRENNATAPKNPSFSETEDSYQTAHDIVLGLADCIRQNGGANPDGDHSLVASAVSAIVDNAGHAIAKHLDISGGNNPGVTSINSLNLIQHILDIHINSLALLRETLGDRFSRIFEISLAVEASSAVTASFAPPKAHRSQQSSETHDESGNHANEVPSNPSKCFNVKAVKVSAAVSALVVGAIIYGVVSLERMMVVLRLKEGLDILQFLRISKASTNGVTHSIGNFKIDSSTEVLVHWFKILIGNCKTVYNGVIAEILGDSYVLAFSRLQRTLPLGIVLPPAYSIFAMVLWRPYLYDTSTSNHEDIQLYQSLLGAISDITRHQPFRDVCFRNMHLFYDLLAADVGDSEFAAIVELRSPDECLKALSPLRARVFLNALLDCEIPVTMRDDGTYALEPGCAEASTKNDVKFPERLIEILNVLQPAKFHWQWVELRLLLDEQSLIEKPKNVPYVKALRSLSPNAENFTLSEREKGLTEVILSRLLVRPDAAPLYSELIHLLGKLQESFVMGIKWFLQGQDVLLGNNSVRQQLVNLTQRKGFPMKTQFWKPWGWSKLVGYANANKSSKRKLEVTSIEEREVDGLIDSRKSSNRKSLNVGTSPEGHGSTQKYFTQEALAELVLPSIDRSSSEFRFVFAGDLIKHMGVISEHIKAAVWNGINKLNSSNPSGNEGLSKPNGRKGIFSGSPNIRKHSPVPNDSTTPSASALRSSIWLRLQFIIRLLPVIIADSNMRQTLASSLLSLVGTRVVYEDADSLEPYMDDVLLDCPSESLFDRLLCVLQALLGNSQPSWLKTKPSSKPDVKFLRDLSAIDKEVTKSLQCALDRMELPATIRRRIQVAMPILPTSRLSSIICGPPLLSSAALSPFQCSTSTAGPHQQFPLNWIPTNLSSRCKAALPSQDPNMEIDPWTLLEDGTSCPNTNSGSNSANGVTGDHANLKACSFLKDSVRVRRTDLTYIGSLDEDS
Length2190
PositionKinase
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.205
Instability index47.83
Isoelectric point8.11
Molecular weight242592.23
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03690
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.00|      13|      15|    1137|    1150|       1
---------------------------------------------------------------------------
 1137- 1150 (19.67/14.29)	RQSTSVAfAYARYF
 1155- 1167 (25.33/13.43)	RDVTSVA.RWERNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.40|      12|      21|    1786|    1797|       2
---------------------------------------------------------------------------
 1786- 1797 (21.41/10.96)	GYANANKSSKRK
 1810- 1821 (20.99/10.61)	GLIDSRKSSNRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.20|      16|      20|    1257|    1272|       3
---------------------------------------------------------------------------
 1257- 1272 (28.96/16.81)	HDIVLGLADCIRQNGG
 1279- 1294 (25.25/13.75)	HSLVASAVSAIVDNAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.09|      29|      56|     107|     135|       5
---------------------------------------------------------------------------
  107-  135 (49.24/40.43)	SKPDIATKCKEAL...KKRFRAINES..RAQKRK
  161-  194 (41.85/32.95)	SNEDTRRKWIEALvqpNRRLWSLAEQvpRSFRRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.72|      12|      15|     833|     844|       7
---------------------------------------------------------------------------
  833-  844 (19.82/13.78)	EETKKTKKGQTD
  850-  861 (21.90/16.13)	EDVGHAKTGCKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.59|      13|      15|    1438|    1452|       8
---------------------------------------------------------------------------
 1438- 1452 (14.30/17.99)	QFlRISkASTNGVTH
 1456- 1468 (22.29/14.05)	NF.KID.SSTEVLVH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.42|      31|      40|     631|     661|       9
---------------------------------------------------------------------------
  631-  661 (54.02/39.32)	ASGFRDSTGSIDENNKKDIFSSPGPLHDIIV
  672-  702 (53.40/38.77)	ASGFKSVDVFMTELIRSGIFYPQTYVRQLIV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.00|      31|     623|    1193|    1229|      10
---------------------------------------------------------------------------
 1193- 1229 (45.04/39.63)	GISsgEELDGHVHKKLNGKA...GVLPSmkeiVQRQTDEF
 1826- 1859 (50.96/28.70)	GTS..PEGHGSTQKYFTQEAlaeLVLPS....IDRSSSEF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.82|      17|      23|     575|     596|      11
---------------------------------------------------------------------------
  575-  596 (26.07/26.20)	SKDFSQVYMavsllKD..KMNEIN
  601-  619 (24.74/13.44)	SKSSSQLAM.....KDhlKSGTLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.38|      33|     623|    1381|    1424|      13
---------------------------------------------------------------------------
 1343- 1377 (45.80/43.57)	SRIFEISlAVEASSAVTASFAPPKAHrSQQSSETH
 1392- 1424 (52.58/28.31)	SKCFNVK.AVKVSAAVSALVVGAIIY.GVVSLERM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.15|      17|      23|    1885|    1904|      16
---------------------------------------------------------------------------
 1885- 1904 (25.70/20.12)	GInklNSSNPSGNEGLSKPN
 1908- 1924 (32.45/17.40)	GI...FSGSPNIRKHSPVPN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03690 with Med12 domain of Kingdom Viridiplantae
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