<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03689

Description Uncharacterized protein
SequenceMQRYTGAGHNAGFGGGVPGRGVVAGGREKGRLEPSSFHGANYPANLRRQPQVAPYKLKCDKEPLNARLGAPDFYPQTLSCAEETLTKEYVQSGYKDTVEGIEEAREIVLSQIPYLSKPDIATKCKEALKKRFRAINESRAQKRKAGQVYGVPLSGSLLTKPGMYPEQMHSNEDTRRKWIEALVQPNRRLWSLAEQVPRSFRRKSLFNYLIRYNVPLLRASWLVKVTYLNQVQTSSNNVSSAAPDSLRSQHWTKDVIEYLQLLLDELCSKNGFFGLPSSQEQSLPCLVAGDSPIKLKTGASPASADVEEPSLHFKWSYMIRIVQCHLMEQLLVPSLLIEWVFNQLQERDSTEVLELLLPIVLSLVDTITLSQTYIHMLVEILIQRLSDASPGSLSVKNNPKRSSITSALVELLQYLILAVPDTFVSLDCFPLPSVVAPDVYGKGALLKIAGGGKIASSRRQNASRHLSCGYAICSVQRRASDLSLVANPNLQVRGAANVVQALDKALVTGNLTAAYTSVFNYLSDTLMEETWIKEVSPCLRSSLMWMGAVELSLVCSVFFICEWATCTFRDCRTSQCQNVKFSGSKDFSQVYMAVSLLKDKMNEINNLSSSKSSSQLAMKDHLKSGTLNHSSIKVTAMETASGFRDSTGSIDENNKKDIFSSPGPLHDIIVCWLDQHEISDASGFKSVDVFMTELIRSGIFYPQTYVRQLIVSGITIWNDSLFDLEKKTRHYKILKHLPGFCLFNILEEAKIAEDQVLYEIVSTYSSERRLVLSELSSGLATDANVEGRVPLSSCLQKQPDLLMDSTDDNHGRVAVQVEEVKLMISGLLNLGYSTLLAESGREETKKTKKGQTDLVDSEEDVGHAKTGCKDSSRTKRQKLDKNVFPFQGSPLVQSDEEDFWWVRKEQKQELFTVETIHQSIEQTSGGKTTVVQKTQNIAQLAAARIDGSQGASTSHVCDNNLSCPHHKPGTNSDILKDADHMSMLTLAEVGKSLKRLRLLERRSISIWLLKSIKQLIEGDEVKHSKANNSISASTVQHSGKIASGWRFGEDELLSVLYIMDTCCDLLSSVRLLIWLLSKIYIGRTTSGQVGRGVMHPKHKENQVFQVAEAFLFSSLLRYENILIAMDLLPEVLSVSMNRTVHKSGERQSTSVAFAYARYFLRKYRDVTSVARWERNFRSTSDKRLLAELDSGKSITGDSIISGISSGEELDGHVHKKLNGKAGVLPSMKEIVQRQTDEFLRNLRENNATAPKNPSFSETEDSYQTAHDIVLGLADCIRQNGGANPDGDHSLVASAVSAIVDNAGHAIAKHLDISGGNNPGVTSINSLNLIQHILDIHINSLALLRETLGDRFSRIFEISLAVEASSAVTASFAPPKAHRSQQSSETHDESGNHANEVPSNPSKCFNVKAVKVSAAVSALVVGAIIYGVVSLERMMVVLRLKEGLDILQFLRISKASTNGVTHSIGNFKIDSSTEVLVHWFKILIGNCKTVYNGVIAEILGDSYVLAFSRLQRTLPLGIVLPPAYSIFAMVLWRPYLYDTSTSNHEDIQLYQSLLGAISDITRHQPFRDVCFRNMHLFYDLLAADVGDSEFAAIVELRSPDECLKALSPLRARVFLNALLDCEIPVTMRDDGTYALEPGCAEASTKNDVKFPERLIEILNVLQPAKFHWQWVELRLLLDEQSLIEKPKNVPYVKALRSLSPNAENFTLSEREKGLTEVILSRLLVRPDAAPLYSELIHLLGKLQESFVMGIKWFLQGQDVLLGNNSVRQQLVNLTQRKGFPMKTQFWKPWGWSKLVGYANANKSSKRKLEVTSIEEREVDGLIDSRKSSNRKSLNVGTSPEGHGSTQKYFTQEALAELVLPSIDRSSSEFRFVFAGDLIKHMGVISEHIKAAVWNGINKLNSSNPSGNEGLSKPNGRKGIFSGSPNIRKHSPVPNDSTTPSASALRSSIWLRLQFIIRLLPVIIADSNMRQTLASSLLSLVGTRVVYEDADSLEPYMDDVLLDCPSESLFDRLLCVLQALLGNSQPSWLKTKPSSKPDVKFLRDLSAIDKEVTKSLQCALDRMELPATIRRRIQVAMPILPTSRLSSIICGPPLLSSAALSPFQCSTSTAGPHQQFPLNWIPTNLSSRCKAALPSQDPNMEIDPWTLLEDGTSCPNTNSGSNSANGVTGDHANLKACSFLKDSVRVRRTDLTYIGSLDEDS
Length2199
PositionKinase
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.210
Instability index47.85
Isoelectric point8.10
Molecular weight243619.39
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03689
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.00|      13|      15|    1146|    1159|       1
---------------------------------------------------------------------------
 1146- 1159 (19.67/16.36)	RQSTSVAfAYARYF
 1164- 1176 (25.33/15.38)	RDVTSVA.RWERNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      91.81|      20|      21|      43|      62|       2
---------------------------------------------------------------------------
   24-   43 (32.87/18.46)	AGGR.EKGRLEPSSFHGANYP
   44-   63 (35.11/20.26)	ANLR.RQPQVAPYKLKCDKEP
   64-   83 (23.83/11.19)	LNARlGAPDFYPQTLSCAEE.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.40|      12|      21|    1795|    1806|       3
---------------------------------------------------------------------------
 1795- 1806 (21.41/13.11)	GYANANKSSKRK
 1819- 1830 (20.99/12.69)	GLIDSRKSSNRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.20|      16|      20|    1266|    1281|       4
---------------------------------------------------------------------------
 1266- 1281 (28.96/20.04)	HDIVLGLADCIRQNGG
 1288- 1303 (25.25/16.41)	HSLVASAVSAIVDNAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.00|      31|     632|    1202|    1238|       6
---------------------------------------------------------------------------
 1202- 1238 (45.04/41.46)	GISsgEELDGHVHKKLNGKA...GVLPSmkeiVQRQTDEF
 1835- 1868 (50.96/30.04)	GTS..PEGHGSTQKYFTQEAlaeLVLPS....IDRSSSEF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.42|      31|      40|     640|     670|       8
---------------------------------------------------------------------------
  640-  670 (54.02/38.44)	ASGFRDSTGSIDENNKKDIFSSPGPLHDIIV
  681-  711 (53.40/37.90)	ASGFKSVDVFMTELIRSGIFYPQTYVRQLIV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     160.64|      51|     623|     232|     283|       9
---------------------------------------------------------------------------
  232-  283 (84.28/58.41)	QT....SSNNVSSA...APDSLRS..QHWTKDVIEYLQLLLDElCSKNGFFGLPSSQEQSL
  851-  910 (76.36/48.19)	QTdlvdSEEDVGHAktgCKDSSRTkrQKLDKNVFPFQGSPLVQ.SDEEDFWWVRKEQKQEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.04|      17|     623|    1390|    1452|      10
---------------------------------------------------------------------------
 1352- 1369 (23.28/18.14)	SRIFEISlAVEASSAVTA
 1401- 1417 (28.77/56.35)	SKCFNVK.AVKVSAAVSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.44|      22|      23|     581|     602|      11
---------------------------------------------------------------------------
  581-  602 (38.21/20.58)	FSGSKDFSQVYMAVSLLKDKMN
  607-  628 (36.23/19.16)	LSSSKSSSQLAMKDHLKSGTLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.15|      17|      23|    1894|    1913|      15
---------------------------------------------------------------------------
 1894- 1913 (25.70/26.96)	GInklNSSNPSGNEGLSKPN
 1917- 1933 (32.45/23.38)	GI...FSGSPNIRKHSPVPN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03689 with Med12 domain of Kingdom Viridiplantae
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