<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03687

Description Uncharacterized protein
SequenceMGSRGGDADAWETASARSGVSSSSSGRATAAAAAPAPENKVFVALPAQHKSGRSTLAWALRHVAELAPAAIGGGGEVVVVAAHVHSPAQMIPMSMGGKFHASKLRPEQVSTYRKYEREQVEKNLDEYLEQCTKMKVKCEKIVIENEDIANGITELILLHGVSKLVMGAAADKQYSRKMKLPKSKTALSVTVKANPSCKIWFVCKEHLIYTRDFVAPISPNSQSPDTIRGSISNLAARGGTTNQYANNAVNGYVQRSMSEMVVPASSRVSLQLHSRSSLQESLSRLNMEGTSVDSRDSFRRGSFPSSYRASSTVTEEVLSDSSSSGIPRDGISTLAGCDFPNAALHHEQGDAGSNANLFDKLEEAFAEAEKYRKQAYDESLRRQKTEEELISYHQKARKSEDLFLNEAKQRKEVEETLAKANVEIQLLKEEMDALKHNRDDLSSKLSKVSEQKVTLEQQAVEYGSIIIDLKDTVAASQALIDSMQMEFEQLKHERDNALKHAEELHREKQNMVSSSDLEWSTEFSLLELQQATQNFSDAMKIGEGGFGCVYRGQLRNTTVAIKMLRSQNLQGQSQFQQEVAVLSRVRHPNLVTLVGYCSEASGLVYEFLPNGSLEDHLACESNTSPLTWQIRTRIIGEICSALIFLHSDKPHAVIHGDLKPANILLDANLVSKLGDFGISRLLNRSSTVSTSFYQTTNPRGTFAYMDPEFLTTGELTARSDIYSFGIIILRLVTGKPALGIAREVEVALDKGELELLVDRSAGDWPFVQAEKLMLLGLQCAELSRRKRPDRMNHVWSVVEPLVKSASLPVEPESIGHWVNKNRTPFYFICPISQEVMRDPHIAADGFSYEEEAIKGWLGSGHNTSPMTKSTLEHLQLIPNLALRSAIEEFMQQKQQQIPS
Length899
PositionTail
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.379
Instability index48.40
Isoelectric point6.19
Molecular weight99388.28
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03687
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.90|      26|     135|     385|     455|       2
---------------------------------------------------------------------------
  415-  440 (42.57/88.02)	ETLAKANVEIQLLKEEMDALKHNRDD
  471-  496 (44.33/ 7.15)	DTVAASQALIDSMQMEFEQLKHERDN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.78|      29|     245|     282|     313|       4
---------------------------------------------------------------------------
  162-  191 (45.51/23.79)	SKLVM.GAAADKQYS.RKMKLPKSKTAlSVTV
  283-  313 (43.28/31.68)	SRLNMeGTSVDSRDSfRRGSFPSSYRA.SSTV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.98|      19|     563|     200|     225|      11
---------------------------------------------------------------------------
  200-  218 (36.46/16.76)	W.FVCKEHLIYTRDFVAPIS
  764-  783 (29.51/11.20)	WpFVQAEKLMLLGLQCAELS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03687 with Med32 domain of Kingdom Viridiplantae
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