<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03683

Description Uncharacterized protein
SequenceMTSSSAPNPSPLVPTPTPSPPTANAAAAAAGAVPVSSPPPPPKDQQQEGQGGGGGVGDGGGVEEVGVGGGEAMEVDGGAGGGGGGVGDVEGGGGGGGAGGGGGGGGQQASPATVFRIRLKQPPSSLRHKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVKADSPRDFVQFIEWSPRSCPRALLVANFHGRITIWTQPTKGPTNLVRDASSWQCEHEWRQDLSVVTKWLSGISPYRWLPANSSTSSNLKTFEEKFLTQQPQSSAGWPSILCVCSVFSSGSVQLHWSQWPSQNSAQPRWFSTSKGLLGAGPSGIMAADAIITETGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSSLPPSLNPPLWAGFAPLASYLFSLQDYLVSEGAQTKQQAQVDNETTEVASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGSVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSVQPVVLHPIFGSPANFGGQPPTQTVWSTRVNKSIPPSEDLKNPQSYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFEQVDSYHVNVGSAIAPPAFSSSGCCLASVWHDTLKDRTILKIIRVLPPAILNAQTKVSSAVWERAIADRFWWSLLAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDADFHCLPTIQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSDMLSSIGPDKMTVDPALLLSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSGSGNSRNMVTSPTNSSPSPSTNQGNQGGVASTTGSSQMQEWVQGAIAKISNNTDGAANAAPNPISGRSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRIPANAQKSSDSSMQKQHLMNSKTEDNTLAVRSGLGAAKLEDGTTSRGQMVGAKGAEENPVGNKSARIGSGNAGQGYTSDEVKVLFLILVDLCKRTATLQHPLPSSQVGSSNIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDLGPLDNMRQLKINGSTNRHLSDMEEDGDSSFGIQNLWPRKRRLSERDAAFGLKTSVGLGSFLGVMGSRRDVITAVWKTGLEGEWYKCIRCLRQTCAFAQPGALAPNTSNELEAWWISRWTHACPMCGGTWVKVV
Length1299
PositionTail
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.210
Instability index51.17
Isoelectric point6.29
Molecular weight138430.49
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03683
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.73|      16|      21|      68|      88|       1
---------------------------------------------------------------------------
   68-   88 (32.28/20.20)	GGGeamevDGGAGGGGGGVGD
   92-  107 (37.45/14.82)	GGG.....GGGAGGGGGGGGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.45|      17|      19|     868|     885|       2
---------------------------------------------------------------------------
    3-   19 (31.87/10.40)	SSSAPNPSPLVPTPTPS
  868-  884 (30.58/ 9.59)	SSGSGNSRNMVTSPTNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.53|      11|      22|     376|     386|       3
---------------------------------------------------------------------------
  376-  386 (20.02/10.01)	PGLGNGIQATA
  400-  410 (22.51/12.35)	PPLWAGFAPLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.27|      18|     125|      24|      42|       4
---------------------------------------------------------------------------
   24-   41 (33.53/16.63)	NAAAAAA...GAVPVSSPPPP
  149-  169 (28.74/10.57)	NAIACASetcARIPSSNSSPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     139.65|      32|      32|     491|     522|       5
---------------------------------------------------------------------------
  454-  480 (26.68/ 9.31)	.....YVSPEA.AAQSATTTT.....WGSGVtsvafDP
  491-  522 (61.39/31.72)	IVEGQYMSPYD.PDEGPSITGWRVQCWESSV.....QP
  524-  555 (51.59/25.39)	VLHPIFGSPANfGGQPPTQTVWSTRV.NKSI.....PP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.59|      17|      19|     827|     845|       6
---------------------------------------------------------------------------
  829-  845 (27.60/21.67)	LLSIQGYVDAVLDLASH
  847-  863 (29.99/16.46)	ITRLRRYASFCRTLASH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.95|      22|      30|     596|     625|      11
---------------------------------------------------------------------------
  596-  622 (31.10/33.69)	PNdvrqLAQiVYSAH...GGEVA.VAFLRGG
  629-  654 (32.85/13.18)	PN....FEQ.VDSYHvnvGSAIApPAFSSSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     194.71|      47|      47|     243|     289|      14
---------------------------------------------------------------------------
  203-  235 (47.49/18.23)	..............EWSPRSCPRALLVANFHGRITIWTQPTKGPTNL
  243-  289 (82.85/36.65)	QCEHEWRQDLSVVTKWLSGISPYRWLPANSSTSSNLKTFEEKFLTQQ
  291-  329 (64.38/27.03)	QSSAGWPSILCVCSVFSSGSVQLHWSQWPSQNSAQPRWF........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.91|      12|      24|     556|     567|      15
---------------------------------------------------------------------------
  556-  567 (22.37/16.24)	SEDLKNPQSYVP
  581-  592 (21.55/15.32)	SVDRANRLSFDP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03683 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EDGTTSRGQMVGAKGAEENPVGNKSARIGSGNA
2) MTSSSAPNPSPLVPTPTPSPPTANAAAAAAGAVPVSSPPPPPKDQQQEGQGGGGGVGDGGGVEEVGVGGGEAMEVDGGAGGGGGGVGDVEGGGGGGGAGGGGGGGGQQASPATVFRIRLKQPP
3) SSGSGNSRNMVTSPTNSSPSPSTNQGNQGGVASTTGS
1024
1
868
1056
123
904










Molecular Recognition Features






MoRF SequenceStartStop




1) VFRIRLK
114
120