<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03682

Description Uncharacterized protein
SequenceMATPATAASDATNPEAAEVPSAAPASELEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYASPPAPAFSYNVLPRPSPRPQVGSGAAQQQLASPPAMMAPSVAAAALQPPVPGQYFGNRPSFSYNVVSHANAGLPTGQQFQLDTGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQAQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAVGASVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQQPGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMVGSSSVTAYLPSIQPPGVSTTDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEPEKVAAQPVPVSWDKLAGTDWSIVTTSDGKKYYYDNKLKVSSWQLPPEVAELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPAVQTGGRDSLPLRQTVAPASSSALDLIKKKLQDAGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFKVEMLKERGVLPFSKWEKELPKIVFDPRFKAIPSHSRRRSTFEQYVRTRADEERKEKRAAQRAAVEAYKQLLEEASEDINSNKDYKEFKRKWGTDPRFEALDRKERDALFNEKVKSIEEKVQSVRNAVIAEFKSMLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQIYYVITQAKLKEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEIAARTTDEGKTAINSWTEAKGLLRSDPRYNKLASKDRESIWRRYADDMKTKLKQSDMKEKSDTDGKQRSSYTYLLAVRGEADPARIHSLVATALSRPDDYPRLHGSRPLFSLAASRLARLRRPDLAASLLRALLDSAPASPGLLARAISLFPGPDDALRAFSDSAPAARSDVSLSALLSALFRAGRVDDVKSTLACAETSFGVAPGRASHNVLLHALVKNSELAAARKLLGEMAKKLKHRPAPDIVSYNTVLAGYSAQGDEEGFEKLLKEISAKKLELNVVTYNCRIQWFAKKGETFKGEELLDAMESKDVAPNYLTYNALVQGYCKEGNVGSAMRVFKRMKVMKRREGRSDLGVSAHSQTYVVLFRSLVEKERLDDALWICKSCFAMKAAPPFEAVKGLVEGLVKGGKSAEAKDVVAKMNLLVKGDAKVAWEKIAGELSLEGTPSSNP
Length1458
PositionUnknown
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.595
Instability index51.65
Isoelectric point8.80
Molecular weight157633.34
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03682
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     146.41|      28|      28|      72|      99|       1
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   63-   87 (43.67/14.84)	.GSGP..AAPSM........PANPAS.PAT.....P..GP.PRPQ
   88-  115 (37.96/11.81)	FAGSPAYASPPA........PA..FSyNVL.....P..RPsPRPQ
  202-  235 (35.13/10.31)	NLARPSSAFPGA.....gamPPNP...PGSirlpfP..GP.PRPS
  350-  386 (29.65/ 7.40)	TSQSPTAFQQPGqqqlypsyPSAHGV.QPQ.....PlwGY.P.PQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     287.12|      38|      68|     953|     990|       2
---------------------------------------------------------------------------
  782-  814 (41.24/17.74)	.YKEFKRKWGTDPR.....FEAL..DRKERDA..LFNEKVKSI
  844-  877 (44.73/19.82)	RWTKVKENFRSDAR.....YKAMKHE....EREVAFNEYIAEL
  884-  915 (31.27/11.81)	AEQAAKAKL..DEQ.....IYYVITQAKLKEREREMRKR....
  953-  990 (61.77/29.96)	SWTESKPRLEKDPQ.....GRAVNPDLGKGDAEKLFRDHVKDL
 1024- 1057 (52.13/24.22)	SWTEAKGLLRSDPR.........YNKLASKDRESIWRRYADDM
 1107- 1134 (30.24/11.19)	...DDYPRL....H.....GS..RP.LFSLAASRLARLRRPDL
 1135- 1172 (25.76/ 8.52)	AASLLRALLDSAPAspgllARAISLFPGPDDALRAFSD.....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     205.90|      37|      37|    1267|    1303|       3
---------------------------------------------------------------------------
 1237- 1263 (23.37/11.91)	........KLLGEM.AK....KLKhrpaPDIVSYN..............TVLA.....G
 1267- 1303 (65.40/48.55)	QGDEEGFEKLLKEISAK....KLE....LNVVTYN..............CRIQWFAKKG
 1307- 1338 (50.19/35.30)	KGEE.....LLDAMESK....DVA....PNYLTYN..............ALVQGYCKEG
 1353- 1398 (33.56/20.79)	MKRREGRSDL..GVSAH....S.Q....TYVVLFRslvekerlddalwiCK.SCFAMK.
 1407- 1441 (33.39/20.64)	KGLVEGLVKGGKSAEAKdvvaKMN....L.LVKGD..............AKVAW.....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     257.90|      48|      49|     560|     607|       4
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  441-  478 (49.53/21.11)	ANPG....SEQPTQQ.GS.QNSDQLE.DKRTT..AIQ........DS.....D.SWSAHKT.
  488-  530 (31.61/10.82)	....ALTGESTYQKPPGYKGEPEKV.........AAQpvpvswdkLAG...TDwSI...VTT
  560-  607 (79.36/38.23)	AESGPLKGSSTSLQDAGTIGNKEEISIDIDTP..AVQ........TGG...RD.SLPLRQTV
  610-  658 (48.35/20.43)	ASSSALDLIKKKLQDAGA....SSVPSPLATPssASE........LNGsktTD.AAPMGHQV
  669-  710 (49.06/20.83)	SGDGNMSDSSSNSDDEEHGPSEEECTRQFKVE..MLK..........E...RG.VLPF....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.69|      22|      67|     324|     345|       5
---------------------------------------------------------------------------
  269-  288 (27.29/ 8.97)	TRSVP..EA.SP...QTMQLSTG........PPS.
  298-  327 (23.99/ 6.92)	TVQMPtnPSLPT...RPEVFGAV..gasvpgQPST
  395-  427 (24.41/ 7.18)	FQSYP..SGLLGplgRPMVGSSSvtaylpsiQPPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.56|      18|     165|      10|      31|       6
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   14-   31 (32.74/ 9.76)	PEAAEVPSAAPASELEGP
  181-  198 (29.82/ 6.71)	NHAVQVSRFVPPSSLQPP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.47|      21|      82|      40|      60|       8
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   40-   60 (36.17/15.89)	ATTPAVVDSAVEGDAPAAPAP
  126-  146 (38.30/17.26)	ASPPAMMAPSVAAAALQPPVP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.85|      21|      65|     758|     778|      10
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  730-  755 (22.20/12.43)	PShsrRRSTFEQYvrTRADEERKEKR
  756-  776 (31.65/21.21)	AA...QRAAVEAY..KQLLEEASEDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      61.38|      14|     138|     937|     950|      11
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  937-  950 (22.77/15.30)	SSYQALL.VEIIKDP
 1078- 1092 (19.58/12.00)	SSYTYLLaVRGEADP
 1093- 1106 (19.02/11.41)	ARIHSLV.ATALSRP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03682 with Med35 domain of Kingdom Viridiplantae
Unable to open file!