<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03681

Description Uncharacterized protein
SequenceMATPATAASDATNPEAAEVPSAAPASELEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYASPPAPAFSYNVLPRPSPRPQVGSGAAQQQLASPPAMMAPSVAAAALQPPVPGQYFGNRPSFSYNVVSHANAGLPTGQQFQLDTGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQAQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAVGASVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQQPGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMVGSSSVTAYLPSIQPPGVSTTDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEPEKVAAQPVPVSWDKLAGTDWSIVTTSDGKKYYYDNKLKVSSWQLPPEVAELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPAVQTGGRDSLPLRQTVAPASSSALDLIKKKLQDAGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFKVEMLKERGVLPFSKWEKELPKIVFDPRFKAIPSHSRRRSTFEQYVRTRADEERKEKRAAQRAAVEAYKQLLEEASEDINSNKDYKEFKRKWGTDPRFEALDRKERDALFNEKVKSIEEKVQSVRNAVIAEFKSMLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEIAARTTDEGKTAINSWTEAKGLLRSDPRYNKLASKDRESIWRRYADDMKTKLKQSDMKEKSDTDGKQRSSYTYLLAVRGEADPARIHSLVATALSRPDDYPRLHGSRPLFSLAASRLARLRRPDLAASLLRALLDSAPASPGLLARAISLFPGPDDALRAFSDSAPAARSDVSLSALLSALFRAGRVDDVKSTLACAETSFGVAPGRASHNVLLHALVKNSELAAARKLLGEMAKKLKHRPAPDIVSYNTVLAGYSAQGDEEGFEKLLKEISAKKLELNVVTYNCRIQWFAKKGETFKGEELLDAMESKDVAPNYLTYNALVQGYCKEGNVGSAMRVFKRMKVMKRREGRSDLGVSAHSQTYVVLFRSLVEKERLDDALWICKSCFAMKAAPPFEAVKGLVEGLVKGGKSAEAKDVVAKMNLLVKGDAKVAWEKIAGELSLEGTPSSNP
Length1451
PositionUnknown
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.602
Instability index51.81
Isoelectric point8.81
Molecular weight156752.31
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03681
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     390.83|      41|      42|     302|     342|       1
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    6-   43 (28.80/ 6.02)	.T..AASDATNPE...........A..AE..VP..sA..A.......PASELEGPfdSGVVA.......AA.........TTP
   66-  108 (53.31/17.18)	PA..APSMPANPAS...PA...TPG..PP..RPqfaG..S.......PA.YASPP..APAFS.......YN.........VLP
  163-  218 (35.38/ 9.02)	HA..NAGLPTGQQFqldTGtnhAVQ..VSrfVP..............PSSLQPPA..PMNLA.......RPssafpgagaMPP
  227-  269 (42.38/12.20)	PF...PG.PPRPSI...NT...FVA..SP..QQ...A..Q.......PQA..SQL..PSNSGssdvstsRS.........DT.
  302-  342 (76.95/27.95)	PT..NPSLPTRPEV...FG...AVG..AS..VP...G..Q.......PSTILSAP..PSLLG.......RP.........MTP
  346-  387 (51.22/16.23)	PF...PQTSQSPTA...FQ...Q.........P...G..QqqlypsyPSAHGVQP..QPLWG.......YP.........PQP
  393-  412 (30.86/ 6.96)	PP..FQSYPS..GL...LG.............P...........................LG.......RP.........MVG
  421-  465 (38.13/10.27)	PSiqPPGVSTTDRD...SK...ELS..SA..NP...GseQ.......PTQQGSQN..SDQLE.......DK.........RTT
  468-  505 (33.79/ 8.29)	QD..SDSWSAHKTE...AG...VVYyyNA..LT...G..E........ST.YQKP..PGYKG.......EP............
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     353.06|      38|      68|     946|     983|       2
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  713-  746 (40.91/18.13)	.WEKE..LPKIVFDPR.....FKAI.PSH..SR...RRSTFEQYVRTR
  781-  814 (45.14/20.78)	DYKEF..KRKWGTDPR.....FEAL..DR..KE.RDA..LFNEKVKSI
  844-  877 (46.34/21.53)	RWTKV..KENFRSDAR.....YKAMKHE.......EREVAFNEYIAEL
  884-  920 (29.20/10.78)	AEQAA..KAKLDEQAK.....LKEREREM..RKrKEREEQEMERVK..
  946-  983 (59.64/29.87)	SWTES..KPRLEKDPQ.....GRAVNPDL..GK.GDAEKLFRDHVKDL
 1017- 1050 (50.27/24.00)	SWTEA..KGLLRSDPR.........YNKL..AS.KDRESIWRRYADDM
 1053- 1089 (24.46/ 7.81)	KLKQSdmKEKSDTDGK.....QRSSYTYLlaVR.GEADPA.RIH....
 1097- 1127 (33.61/13.55)	....S..RP..DDYPR.....LHGSRP.L..FS.LAASRLARLRRPDL
 1128- 1165 (23.50/ 7.21)	AASLL..RALLDSAPAspgllARAISLFP..GP.DDALRAFSD.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     205.90|      37|      37|    1260|    1296|       3
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 1230- 1256 (23.37/11.02)	........KLLGEM.AK....KLKhrpaPDIVSYN..............TVLA.....G
 1260- 1296 (65.40/44.81)	QGDEEGFEKLLKEISAK....KLE....LNVVTYN..............CRIQWFAKKG
 1300- 1331 (50.19/32.59)	KGEE.....LLDAMESK....DVA....PNYLTYN..............ALVQGYCKEG
 1346- 1391 (33.56/19.22)	MKRREGRSDL..GVSAH....S.Q....TYVVLFRslvekerlddalwiCK.SCFAMK.
 1400- 1434 (33.39/19.08)	KGLVEGLVKGGKSAEAKdvvaKMN....L.LVKGD..............AKVAW.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     193.56|      48|      49|     560|     607|       4
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  560-  607 (77.46/39.17)	AESGPLKGSSTSLQDAGTIGNKEEISIDIDTP..AVQTGG...RDSLPLRQTV
  610-  658 (56.58/26.68)	ASSSALDLIKKKLQDAGA....SSVPSPLATPssASELNGsktTDAAPMGHQV
  669-  710 (59.52/28.43)	SGDGNMSDSSSNSDDEEHGPSEEECTRQFKVE..MLK..E...RGVLPF....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.76|      18|      65|     758|     778|       5
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  760-  778 (25.08/22.43)	AAVEAYKQLLEEaSEDINS
  824-  841 (28.67/13.66)	AVIAEFKSMLRE.SKDITS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03681 with Med35 domain of Kingdom Viridiplantae
Unable to open file!