<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03680

Description Uncharacterized protein
SequenceMATPATAASDATNPEAAEVPSAAPASELEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYASPPAPAFSYNVLPRPSPRPQVGSGAAQQQLASPPAMMAPSVAAAALQPPVPGQYFGNRPSFSYNVVSHANAGLPTGQQFQLDTGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQAQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAVGASVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQQPGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMVGSSSVTAYLPSIQPPGVSTTDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSWSAHKTEAGVVYYYNALTGESTYQKPPGYKGEPEKVAAQPVPVSWDKLAGTDWSIVTTSDGKKYYYDNKLKVSSWQLPPEVAELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPADAGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFKVEMLKERGVLPFSKWEKELPKIVFDPRFKAIPSHSRRRSTFEQYVRTRADEERKEKRAAQRAAVEAYKQLLEEASEDINSNKDYKEFKRKWGTDPRFEALDRKERDALFNEKVKSIEEKVQSVRNAVIAEFKSMLRESKDITSTSRWTKVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEIAARTTDEGKTAINSWTEAKGLLRSDPRYNKLASKDRESIWRRYADDMKTKLKQSDMKEKSDTDGKQRSSYTYLLAVRGEADPARIHSLVATALSRPDDYPRLHGSRPLFSLAASRLARLRRPDLAASLLRALLDSAPASPGLLARAISLFPGPDDALRAFSDSAPAARSDVSLSALLSALFRAGRVDDVKSTLACAETSFGVAPGRASHNVLLHALVKNSELAAARKLLGEMAKKLKHRPAPDIVSYNTVLAGYSAQGDEEGFEKLLKEISAKKLELNVVTYNCRIQWFAKKGETFKGEELLDAMESKDVAPNYLTYNALVQGYCKEGNVGSAMRVFKRMKVMKRREGRSDLGVSAHSQTYVVLFRSLVEKERLDDALWICKSCFAMKAAPPFEAVKGLVEGLVKGGKSAEAKDVVAKMNLLVKGDAKVAWEKIAGELSLEGTPSSNP
Length1420
PositionUnknown
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.609
Instability index51.31
Isoelectric point8.66
Molecular weight153491.57
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03680
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     147.91|      28|      28|      72|      99|       1
---------------------------------------------------------------------------
   63-   87 (44.19/13.79)	.GSGP..AAPSM........PANPAS.PAT.....P..GP.PRPQ
   88-  115 (38.92/11.26)	FAGSPAYASPPA........PA..FSyNVL.....P..RPsPRPQ
  202-  235 (35.64/ 9.69)	NLARPSSAFPGA.....gamPPNP...PGSirlpfP..GP.PRPS
  350-  386 (29.16/ 6.58)	TSQSPTAFQQPGqqqlypsyPSAHGV.QPQ.....PlwGY.P.PQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     205.90|      37|      37|    1229|    1265|       2
---------------------------------------------------------------------------
 1199- 1225 (23.37/11.07)	........KLLGEM.AK....KLKhrpaPDIVSYN..............TVLA.....G
 1229- 1265 (65.40/44.64)	QGDEEGFEKLLKEISAK....KLE....LNVVTYN..............CRIQWFAKKG
 1269- 1300 (50.19/32.50)	KGEE.....LLDAMESK....DVA....PNYLTYN..............ALVQGYCKEG
 1315- 1360 (33.56/19.21)	MKRREGRSDL..GVSAH....S.Q....TYVVLFRslvekerlddalwiCK.SCFAMK.
 1369- 1403 (33.39/19.07)	KGLVEGLVKGGKSAEAKdvvaKMN....L.LVKGD..............AKVAW.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     353.06|      38|      68|     915|     952|       3
---------------------------------------------------------------------------
  682-  715 (40.91/21.85)	.WEKE..LPKIVFDPR.....FKAI.PSH..SR...RRSTFEQYVRTR
  750-  783 (45.14/24.99)	DYKEF..KRKWGTDPR.....FEAL..DR..KE.RDA..LFNEKVKSI
  813-  846 (46.34/25.88)	RWTKV..KENFRSDAR.....YKAMKHE.......EREVAFNEYIAEL
  853-  889 (29.20/13.14)	AEQAA..KAKLDEQAK.....LKEREREM..RKrKEREEQEMERVK..
  915-  952 (59.64/35.76)	SWTES..KPRLEKDPQ.....GRAVNPDL..GK.GDAEKLFRDHVKDL
  986- 1019 (50.27/28.80)	SWTEA..KGLLRSDPR.........YNKL..AS.KDRESIWRRYADDM
 1022- 1058 (24.46/ 9.62)	KLKQSdmKEKSDTDGK.....QRSSYTYLlaVR.GEADPA.RIH....
 1066- 1096 (33.61/16.42)	....S..RP..DDYPR.....LHGSRP.L..FS.LAASRLARLRRPDL
 1097- 1134 (23.50/ 8.90)	AASLL..RALLDSAPAspgllARAISLFP..GP.DDALRAFSD.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     181.13|      26|      27|     286|     311|       4
---------------------------------------------------------------------------
  144-  172 (29.73/10.91)	PvPGQYFGNRPSFsynVVS.HANAGLPTGQ
  177-  197 (31.95/12.34)	D.TGTNHAVQVSR...FV..P..PSSL.QP
  286-  311 (48.72/23.15)	P.PSTSTAGSPSI...TVQMPTNPSLPTRP
  316-  339 (37.55/15.95)	A.VGASVPGQPST...ILSAP..PSLLGRP
  405-  425 (33.18/13.14)	P.LGRPMVGSSSV...TAYLP...SI..QP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     203.01|      48|      49|     473|     520|       5
---------------------------------------------------------------------------
  473-  511 (64.97/47.25)	.............WSAHKTEAGVVYYYNALTGESTYQKPPGYK....GEPEKVA.....AQ
  512-  561 (62.79/45.33)	PVPVSWDKLagtdWSIVTTSDGKKYYYDNKLKVSSWQLPP..........E.VAeliknAE
  562-  587 (39.60/24.90)	SGP..........................LKGSSTSLQDAGTI....GNKEEIS.....ID
  604-  635 (35.64/21.41)	ATPSSASEL....NGSKTTDAA................PMGHQvsisGEKSK.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.38|      15|     193|     241|     257|       6
---------------------------------------------------------------------------
  119-  135 (23.04/ 6.89)	GAAQQqlASPPAMMAPS
  241-  255 (28.33/ 9.05)	ASPQQ..AQPQASQLPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.30|      21|      37|       3|      26|       7
---------------------------------------------------------------------------
    3-   26 (28.25/22.58)	TPATAASdATNPEAAEVPsaAPAS
   42-   62 (38.05/19.25)	TPAVVDS.AVEGDAPAAP..APTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.76|      18|      66|     727|     747|       8
---------------------------------------------------------------------------
  729-  747 (25.08/24.10)	AAVEAYKQLLEEaSEDINS
  793-  810 (28.67/14.73)	AVIAEFKSMLRE.SKDITS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.31|      17|     192|     442|     458|       9
---------------------------------------------------------------------------
  426-  442 (25.32/15.32)	PGVSTTDRDSKELSSAN
  443-  459 (27.99/17.87)	PGSEQPTQQGSQNSDQL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03680 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEQAAKAKLDEQAKLKEREREMRKRKEREEQEMERVK
2) AGLPTGQQFQLDTGTNHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFVASPQQAQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQMPTNPSLPTRPEVFGAVGASVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQQPGQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMV
3) APAFSYNVLPRPSPRPQVGSGAAQQQLASPPAMMAPSVAA
4) LPPEVAELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPADAGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSISGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFK
5) MATPATAASDATNPEAAEVPSAAPASELEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYA
6) SSSVTAYLPSIQPPGVSTTDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSW
853
166
99
549
1
413
889
411
138
667
95
473










Molecular Recognition Features






MoRF SequenceStartStop




1) GKKYYYD
533
539