<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03675

Description Uncharacterized protein
SequenceMDGGGGGNWRPTQGADPAAPGGIDPNAPAPAPAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATSQSDYLRKISLKMLSMETKTQQNPGNAQVIQNQNPPGSVPGLPQGSNQTQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNLPGVNQTSTLQNMSGMPQNTMNNGLAQGASQDIYATQRQMAGRQQQQQQSQNQLIYQQQQIMMKQKLQQNSLMQQQSLLQPTQMQSSQQPMMQIPSSLQPGQSIPQTQPMVQSSSQGGIQQNALNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQPTQQPNIPLQHQLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPPQSQHNQLQQSQQHLMSQFQAQPNQLQQQLGMPQQPPMQQRLQTSAGMLLQQNNIDQQKQFMQAQRGLQEVSSSTSVDSTAQTGHTGTGTGDWQEEAYQMVKNLKDQYFPELNDLYNKISLKLQHVDNMVPPQKPTDQYEKMKSFKLMLERTMHVLQLNKGNIQPALRDKIPAYERQIINILNSQKRPRVQGQQTQFQQSAGQGPTSNIPQQQQPSQGLQQHDNHTNQMPQASMPSMSTGLQSSGAAGIQHLPASPATNFGVPATQQNVTNAPQATSNLEVTQGSNFNSLQHGSMSGALQQGSTGPMQGTLNAQQQASSSMLSHNSVGTMQANANSMQANANSLQQLKQQQQEHHMMQNQQMKRQMFQQFQQKQMLQQQLPAQQQLQKQQQSQMQVPQHHSGNDANELKVRQGAAMKPGIYQQHLAQRNNFYNQQIKQGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSLTNTGQATHQQTNMAPQSQSIAVNTPGISASPLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRTTQRQSLSAAVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITHDGTGTSKKMKRDTSAMPLNVSSAGSVNDSLKQTFSIGTPELQSTATSRVKWQKTEINHALMEEIHEINQQLIDTELHVCEDDAESFGATSEGTEGTVIKCTFTAVAVSPSLKSMFASAQMSPILPLRVLVPASYPKCSPVLLDKFPDEQRNSDDLSTKARSKFSILLRGLAEPMSLREIARTWDACARKVIAEYAQQTGGGSFSSSYGCWENCVGA
Length1230
PositionTail
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.03
Grand average of hydropathy-0.759
Instability index70.49
Isoelectric point9.21
Molecular weight134499.98
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03675
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.54|      22|      22|     257|     278|       1
---------------------------------------------------------------------------
  257-  278 (43.50/14.76)	QPMM.QI...PSSLQPGQSIPQTQPM
  386-  411 (29.04/ 6.53)	QHLMsQFqaqPNQLQQQLGMPQQPPM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.98|      22|      24|     179|     202|       7
---------------------------------------------------------------------------
  173-  197 (31.82/ 8.53)	NQTstlQNMSGMPQNTMNNGLAQGA
  362-  385 (26.67/10.17)	GAV.dmPQQQRLPPQSQHNQLQQSQ
  754-  773 (27.50/ 6.09)	PA....QQQLQKQQQSQM.QVPQHH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     106.08|      23|      25|     831|     853|       8
---------------------------------------------------------------------------
  831-  852 (37.21/17.05)	..SHHSPQVD..QHN..LLPSQVKTGT.....P
  853-  874 (23.17/ 7.40)	LqSANSPYMP..SPSppVAPSPI.........P
  875-  894 (24.41/ 8.25)	V.DSEKP.....LSN..LSSSLTNTGQ.....A
  921-  948 (21.28/ 6.10)	L.AEFTS.VDgnQAN...MPTQVLTKSsaaerP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      87.66|      25|      25|     284|     308|       9
---------------------------------------------------------------------------
  290-  315 (32.36/10.21)	NALNSVPQSVQSLLQQPTQsamrQ...QQ
  444-  468 (26.90/ 7.09)	VSSSTSVDSTAQTGHTGTG....TGDWQE
  613-  637 (28.40/ 7.94)	GLQSSGAAGIQHLPASPAT....NFGVPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.76|      22|      26|     776|     798|      15
---------------------------------------------------------------------------
  776-  798 (34.71/23.40)	NDANELKVRQGAAMkPGIYQQHL
  802-  823 (40.05/22.89)	NNFYNQQIKQGSAF.PISSPQNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.43|      15|      26|     987|    1001|      16
---------------------------------------------------------------------------
  987- 1001 (24.87/15.42)	GNGSRAAVGEDLVAM
 1016- 1030 (24.56/15.14)	GTGTSKKMKRDTSAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.32|      28|     523|     525|     553|      20
---------------------------------------------------------------------------
  525-  553 (44.58/29.49)	TMHVlQLNKGNIQPALRDKIPAYERQIIN
 1060- 1087 (48.74/28.24)	TSRV.KWQKTEINHALMEEIHEINQQLID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.21|      12|      80|    1037|    1048|      26
---------------------------------------------------------------------------
 1037- 1048 (21.53/11.70)	AGSVNDSLKQTF
 1118- 1129 (20.68/10.98)	AVAVSPSLKSMF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03675 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDGGGGGNWRPTQGADPAAPGGIDPNAPAPAPAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNEL
2) PLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRT
3) QIINILNSQKRPRVQGQQTQFQQSAGQGPTSNIPQQQQPSQGLQQHDNHTNQMPQASMPSMSTGLQSSGAAGIQHLPASPATNFGVPATQQNVTNAPQATSNLEVTQGSNFNSLQHGSMSGALQQGSTGPMQGTLNAQQQASSSMLSHNSVGTMQANANSMQANANSLQQLKQQQQEHHMMQNQQMKRQMFQQFQQKQMLQQQLPAQQQLQKQQQSQMQVPQHHSGNDANELKVRQGAAMKPGIYQQHLAQRNNFYNQQIKQGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSLTNTGQATHQQTNMAPQSQSIAVNTP
4) QKLQQNSLMQQQSLLQPTQMQSSQQPMMQIPSSLQPGQSIPQTQPMVQSSSQGGIQQNALNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQPTQQPNIPLQHQLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPPQSQHNQLQQSQQHLMSQFQAQPNQLQQQLGMPQQPPMQQRLQTSAGMLLQQNNIDQQKQFMQAQRGLQEVSSSTSVDSTAQTGHTGTGTGDWQEEA
5) RKISLKMLSMETKTQQNPGNAQVIQNQNPPGSVPGLPQGSNQTQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNLPGVNQTSTLQNMSGMPQNTMNNGLAQGASQDIYATQRQMAGRQQQQQQSQNQLIYQQQQ
1
919
550
233
95
72
958
913
470
228










Molecular Recognition Features






MoRF SequenceStartStop




NANANA