<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03670

Description Uncharacterized protein
SequenceMDELGIIEEGVDWRTRLGQDIRDRVKRDILFSLQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDFGDYLRRISLIKGDLDDSYPLMLNNFLHIHQQASTSSFFLLHQKNKQGQIIQAEGNVQGTSSSSHKEPSHPHGKDRISELPNDLIHHIMSFLSMKEAVRTSVLSHWWVNKWTCLQSIKLDINWFRLDREKFRSSIDKLLLSRDHLDAPMDTFQLDSFAVDRASSWINHAIKHNAKVVKFSEYPSWEPFYLDPELVEFSSRYLKTLELTNAALNEMGQQTGSSSFTNSYLTFTTITLVDASDVTSIELTATDRQFTFMEQQGSRQMFRNLRTLRLGEWCMADNFLPLRQYVNHSPVLRKVFLKLSLVDWWSELTTNQLMALVEISSGVTAVESVMQALMFLDSEHDVNMIVSDYCMPDMTGYDLLMEVKKSPKLAHLPVVIASSDNIPERIRKCLDGGAKDYILKPVKIVDLPRGKTHEEDGPILVSLQMKLKTTTSTTLIDLQNGDYLWRTGLIKGDLDDSYPVLLNNFLHVRKQASTPSVVLLHEKNKHGEIIHAQGNVQGTSSSGMFFFFMVNWSFKLTTNQLMALV
Length594
PositionTail
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.09
Grand average of hydropathy-0.242
Instability index39.87
Isoelectric point6.29
Molecular weight68032.20
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process
phosphorelay signal transduction system	GO:0000160	IEA:UniProtKB-KW









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03670
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     391.43|      85|     440|      29|     128|       1
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   29-  128 (149.60/123.91)	ILFSLQMKLQTTT.......................................STTLIDLQKVaarieeriykiaidfGDYLRRISLIKGDLDDSYPLMLNNFLHIHQQASTSSFFLLH.QKNKQGQIIQAEGNVQGTSSS
  140-  187 (50.17/23.79)	.................................................................................DRISELPNDL..IHHIM..SFLSMKEAVRTS..VLSHwWVNKWTCLQSIKLDIN.....
  204-  289 (36.39/18.31)	LLSRDHLDAPMDTfqldsfavdrasswinhaikhnakvvkfseypswepfylDPELVEFSSR.................YLKTLELTNAALNE...........MGQQTGSSSF..........................
  488-  571 (155.27/102.12)	ILVSLQMKLKTTT.......................................STTLIDLQN................GDYLWRTGLIKGDLDDSYPVLLNNFLHVRKQASTPSVVLLH.EKNKHGEIIHAQGNVQGTSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.72|      17|     207|     370|     386|       2
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  370-  386 (34.67/21.08)	LVDWWSELTTNQLMALV
  578-  594 (34.05/20.58)	MVNWSFKLTTNQLMALV
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.64|      21|      74|     341|     361|       3
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  341-  361 (41.85/27.79)	EWCMAD.NFLPLRQYVNHSPVL
  417-  438 (35.79/22.81)	DYCMPDmTGYDLLMEVKKSPKL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03670 with Med15 domain of Kingdom Viridiplantae
Unable to open file!