<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03666

Description Uncharacterized protein
SequenceMEGSSSNNMAGQSLNWRTQISQEARNTIIEMTMEKLLEEFPIDFPGRMKMIQDNATNEEDKTYMVATSKADYVLRIALQMVNSKSKRNSNPLLPQDSSTPVNLQRQHRVAGHNNGLVIMQPHHKQASDGMVMTKDGHMLDQGSSINTRNGSIDRISNLPNELLYAIMSTLPALELVYTGMLSTRWRHLWTSSAYLNIDVNQFGRHRGQKFCNFVNRMLRQRGSSLLDALRLHSADTRDAGSWITYAIKRSSKVVEFSEDIDCEPFKLDYGVVDFTSICLKFLVLNNVCIDANVFYPINSSCPALENLELRDCSLENPQHRAPMIMTLPCLEVAIVILDEFFHSTDDLADMDEGEEQDGEEINHGIVSGLTKARSIELIAPLREDKFEMEIWTSPMFDNLISLTLGEWCMSNEFSPLLHFLWYSPLLEDLTLKLNMEVCEYCLQEPPTAPPLVKEFTTDYLKKITIYFWLGDERVSKLLTLLAPICKSLEDIKLIPSTPPGVRAFVSRVQRIIK
Length513
PositionTail
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy-0.237
Instability index47.21
Isoelectric point5.24
Molecular weight58385.35
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03666
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.95|      11|      45|     380|     390|       1
---------------------------------------------------------------------------
  380-  390 (21.55/16.66)	PLRED...KFEMEI
  424-  437 (15.40/ 9.69)	PLLEDltlKLNMEV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.59|      10|      14|     101|     110|       2
---------------------------------------------------------------------------
  101-  110 (17.34/12.65)	VNLQRQHRVA
  117-  126 (19.25/14.81)	VIMQPHHKQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.45|      10|      49|     446|     455|       3
---------------------------------------------------------------------------
  446-  455 (19.85/11.75)	PTAPPLVKEF
  495-  504 (20.60/12.44)	PSTPPGVRAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      23.20|       8|      15|     253|     262|       4
---------------------------------------------------------------------------
  253-  262 ( 7.18/12.24)	VVEFSeDIdC
  271-  278 (16.02/ 8.84)	VVDFT.SI.C
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.00|      14|     129|     161|     174|       6
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  161-  174 (24.37/13.26)	ELLYA.IMSTLPALE
  292-  305 (25.91/14.51)	NVFYP.INSSCPALE
  317-  331 (21.71/11.10)	PQHRApMIMTLPCLE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03666 with Med15 domain of Kingdom Viridiplantae
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