<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03665

Description Uncharacterized protein
SequenceMAAAAAERQLVVAVEGTAALGPYWPVTVADYVEKIVRSFCAHEMAGQKLAGTPPELALVVFHTHGPYSAFCVQRSGWTKDMNVFLSWLSGISFSGGGFSEAAISEGLAEALMILQGSSSNSQNHQSHEVQKHCILVAASNPYPLPTPVYRPLVQSSDHKENNDGAKESCLADAETVAKSFAQCSVSLSVVSPKQLPTLKAIYNAAKRNPRAADPSVDHAKNPHFLVLLSDNFLEARTALSRPLPGNLVTNHPITKMDTAATSVPVPTSNGNPSVNGPMLTRQPNGVVANIKTEPTTLPPMVSAPAFSHVTPVANGVSQGLSSVQSPSPSLISQETNLANDSVQEHKPLINPIQQSIRPGGPANVSILNNLSQHRSVATIISGGMPGIPMSGTGQSIGSQQVVQNTAFGSNTPITGNSNIAVSSSLGGIQSNIGISGPPVTQGGSMGSTQLGQGGINTNQNMISSLGTTTVSSAPAMMPTPGMAQQAGVNSLGVTNSSAMNMPIVQHPNAQQQQQQQQQQQQQQPPPKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGLQQQQLQQHMQLQTQGLPLQQQQSQGHPLQQQQMQQMQQQQQQQQIQQMQQQQQMQQMQQQQQQPQQLQQQQQPQMVGTGMGQQQPQMVGTGMGQQQPQMVGSGMGQQQPQMVGAGMGQQQPQMVGAGMGQQQPQMVGAGMGQQYMQGHGRTVQQMMQGKMAPQGPGSMPGAGSMPGGGYLS
Length823
PositionUnknown
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.404
Instability index54.23
Isoelectric point8.71
Molecular weight87652.28
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03665
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     244.06|      23|      23|     733|     755|       1
---------------------------------------------------------------------------
  669-  689 (32.84/ 7.18)	PLQQQQM..QQMQQQQQQQQI.QQ
  690-  710 (31.15/ 6.38)	MQQQQQMQQMQQQQQQPQQLQ...
  711-  734 (48.29/14.47)	QQQQPQMVGTGMGQQQPQMVGtGM
  735-  758 (49.05/14.83)	GQQQPQMVGSGMGQQQPQMVGaGM
  759-  782 (48.53/14.58)	GQQQPQMVGAGMGQQQPQMVGaGM
  783-  802 (34.21/ 7.82)	GQQY..MQGHGRTVQQ.MMQG.KM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     124.09|      24|      24|     462|     485|       2
---------------------------------------------------------------------------
  378-  395 (23.22/ 6.83)	.........TIISGGMPG..IPMSGTGQS
  396-  419 (24.70/ 7.74)	IGSqqvVQNTAFGSNT.....PITGNSNI
  462-  485 (42.95/19.13)	ISS...LGTTTVSSAPAM..MPTPGMAQQ
  488-  512 (33.22/13.06)	VNS...LGVTN.SSAMNMpiVQHPNAQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     130.05|      29|     212|      94|     136|       3
---------------------------------------------------------------------------
   94-  122 (45.25/12.60)	SGGGFSE.AAISEGLAEALMIL.QGSSSN..SQ
  302-  333 (39.67/ 9.53)	SAPAFSHvTPVANGVSQGLSSV.QSPSPSliSQ
  430-  459 (45.13/12.53)	SNIGISG.PPVTQGGSMGSTQLgQGGINT..NQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     250.65|      79|      89|     127|     214|       4
---------------------------------------------------------------------------
  127-  214 (118.44/109.96)	HEVQKHCILVAASNPYPLPTPVYRPLvqSSDHKENNDGAKESCLADAETVAKSFAQCSVSlsvvSP...KQlPtlKAIYNAAKRNPRAADP
  218-  299 (132.21/94.29)	HAKNPHFLVLLSDNFLEARTALSRPL..PGNLVTNHPITKMDTAATSVPVPTSNGNPSVN....GPmltRQ.P..NGVVANIKTEPTTLPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.55|      15|      64|     538|     557|       5
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  521-  535 (30.62/13.15)	QQQPPPKYVKIWE....GT
  539-  557 (22.93/16.35)	QRQGQPVFICKLEgyrsGT
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.95|      11|      17|     639|     650|       6
---------------------------------------------------------------------------
  639-  650 (19.79/10.91)	FPgLQQQQLQQH
  658-  668 (23.16/ 8.55)	LP.LQQQQSQGH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03665 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ATIISGGMPGIPMSGTGQSIGSQQVVQNTAFGSNTPITGN
2) LPGNLVTNHPITKMDTAATSVPVPTSNGNPSVNGPMLTRQPNGVVANIKTEPTTLPPMVSAPAFSHV
3) PVANGVSQGLSSVQSPSPSLISQETNLANDSVQEHKPLINPIQQSIRPGGPANVSILN
4) QMQQMQQQQQQPQQLQQQQQPQMVGTGMGQQQPQMVGTGMGQQQPQMVGSGMGQQQPQMVGAGMGQQQPQMVGAGMGQQQPQMVGAGMGQQYMQGHGRTVQQMMQGKMAPQGPGSMPGAGSMPGGGYLS
5) SNIGISGPPVTQGGSMGSTQLGQGGINTNQNMISSLGTTTVSSAPAMMPTPGMAQQAGVNSLG
6) TNSSAMNMPIVQHPNAQQQQQQQQQQQQQQPPPKYVKIWEG
377
243
311
695
430
494
416
309
368
823
492
534










Molecular Recognition Features






MoRF SequenceStartStop




1) KYVKIWE
527
533