<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03664

Description Uncharacterized protein
SequenceMAAAAAERQLVVAVEGTAALGPYWPVTVADYVEKIVRSFCAHEMAGQKLAGTPPELALVVFHTHGPYSAFCVQRSGWTKDMNVFLSWLSGISFSGGGFSEAAISEGLAEALMILQGSSSNSQNHQSHEVQKHCILVAASNPYPLPTPVYRPLVQSSDHKENNDGAKESCLADAETVAKSFAQCSVSLSVVSPKQLPTLKAIYNAAKRNPRAADPSVDHAKNPHFLVLLSDNFLEARTALSRPLPGNLVTNHPITKMDTAATSVPVPTSNGNPSVNGPMLTRQPNGVVANIKTEPTTLPPMVSAPAFSHVTPVANGVSQGLSSVQSPSPSLISQETNLANDSVQEHKPLINPIQQSIRPGGPANVSILNNLSQHRSVATIISGGMPGIPMSGTGQSIGSQQVVQNTAFGSNTPITGNSNIAVSSSLGGIQSNIGISGPPVTQGGSMGSTQLGQGGINTNQNMISSLGTTTVSSAPAMMPTPGMAQQAGVNSLGVTNSSAMNMPIVQHPNAQQQQQQQQQQQQQQPPPKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGDMVVFKPQVPTQQPPMQQQQLQQQQNQLQQQNQLHQQHQLQPQNQLQQQHQLQQQLQQQQLQQHMQLQTQGLPLQQQQSQGHPLQQQQMQQMQQQQQQQQIQQMQQQQQMQQMQQQQQQPQQLQQQQQPQMVGTGMGQQQPQMVGTGMGQQQPQMVGSGMGQQQPQMVGAGMGQQQPQMVGAGMGQQQPQMVGAGMGQQYMQGHGRTVQQMMQGKMAPQGPGSMPGAGSMPGGGYLS
Length878
PositionUnknown
OrganismOryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.488
Instability index56.85
Isoelectric point8.71
Molecular weight94337.60
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03664
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     343.82|      23|      23|     788|     810|       1
---------------------------------------------------------------------------
  651-  671 (37.33/ 7.87)	P..TQQPPMQQQQLQQQQNQLQQ
  700-  722 (38.37/ 8.31)	QQLQQHMQLQTQGLPLQQQQSQG
  724-  742 (36.46/ 7.50)	PLQQQQMQ....QMQQQQQQQQI
  743-  762 (39.41/ 8.75)	QQMQQQQQMQQMQQQQQQP...Q
  764-  786 (50.19/13.37)	LQQQQQPQMVGTGMGQQQPQMVG
  788-  810 (51.71/14.02)	GMGQQQPQMVGSGMGQQQPQMVG
  812-  834 (52.13/14.20)	GMGQQQPQMVGAGMGQQQPQMVG
  836-  855 (38.22/ 8.25)	GMGQQY..MQGHGRTVQQ.MMQG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     124.09|      24|      24|     462|     485|       2
---------------------------------------------------------------------------
  262-  282 (25.58/ 7.62)	..SVPVPTSN.................GNPS...VNGPMLTRQ
  356-  395 (23.85/ 6.58)	IRPGGPANVSilnnlsqhrsvatiisgGMPG...IPMSGTGQS
  462-  485 (44.26/18.91)	ISSLGTTTVS.................SAPAM..MPTPGMAQQ
  488-  512 (30.41/10.54)	VNSLGVTN.S.................SAMNMpiVQHPNAQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     119.12|      23|      24|     409|     431|       3
---------------------------------------------------------------------------
  310-  326 (20.84/ 6.65)	..TPVA.N....GVSQ......GLSSVQSP
  327-  355 (25.43/ 9.91)	SPSLIS.QETNLANDSvqehkpLINPIQQS
  409-  431 (39.57/19.93)	SNTPIT.GNSNIAVSS......SLGGIQSN
  435-  458 (33.28/15.47)	SGPPVTqGGSMGSTQL......GQGGINTN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.45|      13|      25|     517|     537|       5
---------------------------------------------------------------------------
  517-  533 (18.89/11.45)	QQQQQqqppPKYVKIWE
  539-  551 (23.56/10.76)	QRQGQ....PVFICKLE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03664 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ATIISGGMPGIPMSGTGQSIGSQQVVQNTAFGSNTPITGN
2) LPGNLVTNHPITKMDTAATSVPVPTSNGNPSVNGPMLTRQPNGVVANIKTEPTTLPPMVSAPAFSHV
3) PVANGVSQGLSSVQSPSPSLISQETNLANDSVQEHKPLINPIQQSIRPGGPANVSILN
4) QMQQMQQQQQQPQQLQQQQQPQMVGTGMGQQQPQMVGTGMGQQQPQMVGSGMGQQQPQMVGAGMGQQQPQMVGAGMGQQQPQMVGAGMGQQYMQGHGRTVQQMMQGKMAPQGPGSMPGAGSMPGGGYLS
5) SNIGISGPPVTQGGSMGSTQLGQGGINTNQNMISSLGTTTVSSAPAMMPTPGMAQQAGVNSLG
6) TNSSAMNMPIVQHPNAQQQQQQQQQQQQQQPPPKYVKIWEG
377
243
311
750
430
494
416
309
368
878
492
534










Molecular Recognition Features






MoRF SequenceStartStop




1) KYVKIWE
527
533